View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3491_high_3 (Length: 325)
Name: NF3491_high_3
Description: NF3491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3491_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 80 - 308
Target Start/End: Complemental strand, 956550 - 956321
Alignment:
| Q |
80 |
catgacctgaagctagcatgaacaacaacgaaggttcaaatattgtaatggaaacttttattaaaagtggtgttccgtttataaagccattcatatagag |
179 |
Q |
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| T |
956550 |
catgacctaaagctagcatgaacaacaatgaaggttcaaatattgcaatggaaacttttattaaaggtagtgttccgtttgtaaagccattcatatagag |
956451 |
T |
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| Q |
180 |
gcataaactnnnnnnnttcctccacatatcaata-tttatgaagagatagaaacatggaatattagtaactgatgactaatattccatcaaaagagatag |
278 |
Q |
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| T |
956450 |
gcataaactaaaaaaattcctccacatatcaagagtttatgaagagatagaaacatggaatattagtaagtgatgaataatattccatcaaaagagatag |
956351 |
T |
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| Q |
279 |
aaacaaattgcaaaccctatttctttctca |
308 |
Q |
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| T |
956350 |
aaacaaattgcaaaccctagttccttctca |
956321 |
T |
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