View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3491_high_7 (Length: 217)
Name: NF3491_high_7
Description: NF3491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3491_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10872989 - 10873182
Alignment:
| Q |
1 |
ctgccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872989 |
ctgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
10873088 |
T |
|
| Q |
101 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873089 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
10873182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10878060 - 10878253
Alignment:
| Q |
1 |
ctgccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878060 |
ctgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
10878159 |
T |
|
| Q |
101 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878160 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
10878253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10883131 - 10883324
Alignment:
| Q |
1 |
ctgccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883131 |
ctgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
10883230 |
T |
|
| Q |
101 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883231 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
10883324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10887046 - 10887239
Alignment:
| Q |
1 |
ctgccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887046 |
ctgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
10887145 |
T |
|
| Q |
101 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10887146 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtataaattctttcctgccatagtagctttaatactctgt |
10887239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10867323 - 10867130
Alignment:
| Q |
1 |
ctgccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867323 |
ctgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacc |
10867224 |
T |
|
| Q |
101 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
10867223 |
tttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtacaaattctttcctgccatagtagctttaatactctgt |
10867130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 39676864 - 39676679
Alignment:
| Q |
3 |
gccgcagctttcttgtccgaacaacaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctt |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39676864 |
gccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcaggaaaatcagtttgaagaaaatcaagtacgttttgtacacctt |
39676765 |
T |
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| Q |
103 |
tcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaata |
188 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
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| T |
39676764 |
ttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaattctttcctgctatagtagctttaata |
39676679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 10046933 - 10046775
Alignment:
| Q |
36 |
gatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccg |
135 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
10046933 |
gatataccaataacatccatatcaggaaaatcgctttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccgg |
10046834 |
T |
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| Q |
136 |
ttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgt |
194 |
Q |
| |
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||||||| || || ||| |||||||||||||||| ||||| || ||||||||| ||||| |
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| T |
10046833 |
ttgaacatgtaaatctaatgtataaattctttcctgccattgttgctttaatattctgt |
10046775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 37949553 - 37949453
Alignment:
| Q |
36 |
gatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccg |
135 |
Q |
| |
|
||||| |||||||||||||| || || ||||| || |||| |||||||| ||||| || || ||||| || ||||||||||||||||| |||||||||| |
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| T |
37949553 |
gatatgccaataacatccatgtcagggaaatcatttcgaaggaaatcaagaacgttctgcacccctttggagaccatgttcatccccatggcatcacccg |
37949454 |
T |
|
| Q |
136 |
t |
136 |
Q |
| |
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| |
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| T |
37949453 |
t |
37949453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 30708446 - 30708537
Alignment:
| Q |
42 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
133 |
Q |
| |
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||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
30708446 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
30708537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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