View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3491_low_6 (Length: 226)
Name: NF3491_low_6
Description: NF3491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3491_low_6 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 10867698 - 10867482
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867698 |
caagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
10867599 |
T |
|
| Q |
110 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867598 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
10867499 |
T |
|
| Q |
210 |
ctagcatgtgcattaaa |
226 |
Q |
| |
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||||||||||||||||| |
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| T |
10867498 |
ctagcatgtgcattaaa |
10867482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 10872614 - 10872830
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872614 |
caagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
10872713 |
T |
|
| Q |
110 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872714 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
10872813 |
T |
|
| Q |
210 |
ctagcatgtgcattaaa |
226 |
Q |
| |
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||||||||||||||||| |
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| T |
10872814 |
ctagcatgtgcattaaa |
10872830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 10877685 - 10877901
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10877685 |
caagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
10877784 |
T |
|
| Q |
110 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10877785 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
10877884 |
T |
|
| Q |
210 |
ctagcatgtgcattaaa |
226 |
Q |
| |
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||||||||||||||||| |
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| T |
10877885 |
ctagcatgtgcattaaa |
10877901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 10882756 - 10882972
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10882756 |
caagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
10882855 |
T |
|
| Q |
110 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10882856 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
10882955 |
T |
|
| Q |
210 |
ctagcatgtgcattaaa |
226 |
Q |
| |
|
||||||||||||||||| |
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| T |
10882956 |
ctagcatgtgcattaaa |
10882972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 10886671 - 10886887
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10886671 |
caagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtacccacctcaatggaaggcatagtgactgagatatgaaggtcctt |
10886770 |
T |
|
| Q |
110 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10886771 |
tccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatatta |
10886870 |
T |
|
| Q |
210 |
ctagcatgtgcattaaa |
226 |
Q |
| |
|
||||||||||| ||||| |
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| T |
10886871 |
ctagcatgtgcgttaaa |
10886887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 10047387 - 10047233
Alignment:
| Q |
69 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
168 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
10047387 |
acctcaatggaaggcatagtaacagagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcag |
10047288 |
T |
|
| Q |
169 |
gatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcatt |
223 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10047287 |
gatcttgacctgtagccaagtaaatagcagaaacaatattactagcatgtgcatt |
10047233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 39677182 - 39677028
Alignment:
| Q |
69 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
39677182 |
acctcaatggaaggcatagtgactgagatatgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcag |
39677083 |
T |
|
| Q |
169 |
gatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcatt |
223 |
Q |
| |
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||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
39677082 |
gatcttgacctgttgccaagtaaactgctgaaacaatattactagcatgtgcatt |
39677028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 37950441 - 37950286
Alignment:
| Q |
68 |
cacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagca |
167 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||||||||| | || ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
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| T |
37950441 |
cacctcaatggatggcattgtcactgaaatatgaaggtctctcccatcatttacggcttccatcattgttatgcaatgggaactttcaacattttgagct |
37950342 |
T |
|
| Q |
168 |
ggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcatt |
223 |
Q |
| |
|
|||||||| || || || | |||| ||||||||||| ||||||||||| ||||| |
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| T |
37950341 |
ggatcttgaccagtggctataaaaatggcagaaacaatgttactagcatgggcatt |
37950286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 39677392 - 39677330
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacct |
72 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||||||| |
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| T |
39677392 |
caagtaaattaagacaagctgattgagatgcaagttgtgtaccccctccaactgtacccacct |
39677330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 10048346 - 10048284
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacct |
72 |
Q |
| |
|
|||||||||| | |||||||||||| || ||||| ||||| || ||||| ||||||||||||| |
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|
| T |
10048346 |
caagtaaattcaaacaagctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
10048284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 30707963 - 30708069
Alignment:
| Q |
69 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
168 |
Q |
| |
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||||||||||||||||| ||||| || || ||||||||||| || |||||||| |||||||||||||| ||||| |||||||| || ||||||||||||| |
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| T |
30707963 |
acctcaatggaaggcatggtgacagaaatgtgaaggtccttgccatcattcacagcttccatcatggtaatacaatgagaactctccacattctgagcag |
30708062 |
T |
|
| Q |
169 |
gatcttg |
175 |
Q |
| |
|
||||||| |
|
|
| T |
30708063 |
gatcttg |
30708069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 30707644 - 30707706
Alignment:
| Q |
10 |
caagtaaatttagacaagctgattgcgacgcaagttgtgttccccctcctactgtacccacct |
72 |
Q |
| |
|
|||||||||| ||||||||||| || || |||||||||||||||||||| || ||||| |||| |
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|
| T |
30707644 |
caagtaaattaagacaagctgactgagatgcaagttgtgttccccctcccacagtaccaacct |
30707706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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