View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_1 (Length: 678)
Name: NF3492_high_1
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 9 - 662
Target Start/End: Original strand, 47885292 - 47885945
Alignment:
| Q |
9 |
agcacagacaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885292 |
agcacaaacaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtg |
47885391 |
T |
|
| Q |
109 |
tatttttctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885392 |
tatttttctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaaca |
47885491 |
T |
|
| Q |
209 |
tgtttgcccttatatccttacctagtctgtcttgataaaatgaaccgtgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcgaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885492 |
tgtttgcccttatatccttacctagtctgtcttgataaaatgaaccatgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcgaga |
47885591 |
T |
|
| Q |
309 |
caataagccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaagata |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47885592 |
caataagccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaagata |
47885691 |
T |
|
| Q |
409 |
caatgtccacgaatgtctatcttgtacttctgacacaagtctaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaacc |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47885692 |
caatgtccacgaatgtctatcttgtacttctgacacaagtccaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaacc |
47885791 |
T |
|
| Q |
509 |
acttcaactcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatccaat |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885792 |
acttcaactcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatccaat |
47885891 |
T |
|
| Q |
609 |
tggaaaatcgttctgtatttgtttaactttcacaaaggtatactcgcttgtgtc |
662 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885892 |
tggaaaatcgttctgtatttgtttaactttcacaaaggtatactcgcttgtgtc |
47885945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 16 - 637
Target Start/End: Complemental strand, 4623790 - 4623169
Alignment:
| Q |
16 |
acaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtgtattttt |
115 |
Q |
| |
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|||| |||||| || |||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||||||| | |
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| T |
4623790 |
acaacaggcccaactggactatctatgtgtccttgaattccaattccaccaacaggtgcaccttgttcttgcaaatcaagaatgtgttcaatgtatttat |
4623691 |
T |
|
| Q |
116 |
ctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaacatgtttgc |
215 |
Q |
| |
|
||| | || | | || ||||||||||| |||||||||||||||||| | || || || |||||| |||| |||| |||||||||||||||| |
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| T |
4623690 |
ttggacacgatcttgtatcacatccatcttcaatatgataatcattcacaaacaatgtagcggacagatctagttggtttgcagtcttgaacatgtttgc |
4623591 |
T |
|
| Q |
216 |
ccttatatccttacctagtctgtcttgataaaatgaaccgtgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcgagacaataag |
315 |
Q |
| |
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||||||||| || |||| ||| ||||| ||||||||||| |||| |||||||||||||||||||||||| | ||||| ||||||||||||| | | |
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|
| T |
4623590 |
ccttatatctttgcctaatctatcttggtaaaatgaaccatgcagcatttcattgttaacatcatagtgactaaacttacctttgtagcgagttagaaga |
4623491 |
T |
|
| Q |
316 |
ccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaagatacaatgtc |
415 |
Q |
| |
|
| |||||||| ||||| || ||||||| | ||| ||||||||||| || ||||||||||||||||| | | || |||||||| ||||| || |||| |
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|
| T |
4623490 |
ctggttaagcggttttgaacggccgtcatcagatcgtttttattcagcgacttgacccattgttgaacggttccatccacttcccaaaagatgcagtgtc |
4623391 |
T |
|
| Q |
416 |
cacgaatgtctatcttgtacttctgacacaagtctaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaaccacttcaa |
515 |
Q |
| |
|
||||| | | ||||||||||||||||||||| ||| | ||||||||| || || || || |||||||||| |||||||| |||||| |||||||||| |
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|
| T |
4623390 |
cacgagtttggatcttgtacttctgacacaaggttaaaagatcatcagcgtctttgtaattcaaattcccttgttgtggctcagtccaataccacttcaa |
4623291 |
T |
|
| Q |
516 |
ctcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatccaattggaaaa |
615 |
Q |
| |
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|||||| |||| ||||||||||| || |||| ||||| ||||| ||||||||||||||||| || |||| ||| ||||||| | |||||| || ||| |
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|
| T |
4623290 |
ctcatttgcaaacacagcccagttgaagtgtttcacaaggaagttgacaaaatcttcattgtcgatgtttgatctgctgatgcatgttccaatcgggaaa |
4623191 |
T |
|
| Q |
616 |
tcgttctgtatttgtttaactt |
637 |
Q |
| |
|
| ||| ||| ||||| |||||| |
|
|
| T |
4623190 |
ttgttttgtgtttgtctaactt |
4623169 |
T |
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