View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_17 (Length: 397)
Name: NF3492_high_17
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 138 - 390
Target Start/End: Original strand, 3186313 - 3186563
Alignment:
| Q |
138 |
ggtggaagtgggtggagaagtgagtagacatgannnnnnnnnnnnntgatagaaggaagtaagtattgtttagtttttgagtgatgatgagagaaagtta |
237 |
Q |
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| T |
3186313 |
ggtggaagtgggtggagaagtgagtagacatgatgtgtgtgtgt--tgatagaaggaagtaagtattgtttagtttttgagtgatgatgagagaaagtta |
3186410 |
T |
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| Q |
238 |
gctagcaagttagtgtttaaaagccaaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcatcatctcaaactc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3186411 |
gctagcaagttagtgtttaaaagccaaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcatcatctcaaactc |
3186510 |
T |
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| Q |
338 |
attacttgagggtactcctgtccttttccctctttcatatttttattcttgtc |
390 |
Q |
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| T |
3186511 |
attacttgagggtactcctgtccttttccctctttcatatttttattcttgtc |
3186563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 3222013 - 3221950
Alignment:
| Q |
262 |
caaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcat |
325 |
Q |
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| T |
3222013 |
caaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcat |
3221950 |
T |
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