View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_high_18 (Length: 392)

Name: NF3492_high_18
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_high_18
NF3492_high_18
[»] chr8 (3 HSPs)
chr8 (10-212)||(44667857-44668057)
chr8 (284-376)||(44667694-44667786)
chr8 (284-374)||(6816889-6816983)
[»] chr7 (2 HSPs)
chr7 (14-171)||(12538964-12539119)
chr7 (298-371)||(16420417-16420488)
[»] chr2 (2 HSPs)
chr2 (53-212)||(29963792-29963948)
chr2 (45-212)||(2038136-2038298)
[»] scaffold0004 (1 HSPs)
scaffold0004 (45-212)||(188799-188962)
[»] chr6 (2 HSPs)
chr6 (45-212)||(34518514-34518680)
chr6 (284-376)||(34518749-34518844)
[»] chr5 (2 HSPs)
chr5 (284-371)||(37940311-37940398)
chr5 (172-212)||(37940200-37940240)
[»] scaffold0003 (1 HSPs)
scaffold0003 (298-371)||(9129-9200)
[»] chr1 (1 HSPs)
chr1 (173-212)||(51784539-51784578)
[»] chr4 (1 HSPs)
chr4 (179-212)||(28655466-28655499)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 44668057 - 44667857
Alignment:
Q  10 cgtaggataatttgtttatagaactgtacacaatcctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44668057 cgtaggataatttgtttatagaactgtacacaatcctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatac 44667958  T
Q  110 tcgataaaaatagggaatgattttggttcatcaataatagttgcaatgaaaagagtaataatgataataggattcttacttgtcttcctagagtgaatgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44667957 tcgataaaaatagggaatgattttggttcatcaataatagttgcaatg--aagagtaataatgataataggattcttacttgtctccctagagtgaatgt 44667860  T
Q  210 ttg 212  Q
    |||    
T  44667859 ttg 44667857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 44667786 - 44667694
Alignment:
Q  284 aaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaactaaat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44667786 aaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaactaaat 44667694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 6816983 - 6816889
Alignment:
Q  284 aaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttc----ctaaaaatgtggaactaa 374  Q
    |||| |||||||| |||||||| |||| ||||| |||||||||||| | ||||||||| |||| |||  ||||    ||||||||||||||||||    
T  6816983 aaagtatagaatgggtgtgtgttaaaaagaataagaaccggttattattataactctctcactcactaccttccttgctaaaaatgtggaactaa 6816889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 12538964 - 12539119
Alignment:
Q  14 ggataatttgtttatagaactgtacacaatcctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatactcga 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12538964 ggatagtttgtttatagaactgtacacaatcctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctatatgatactcga 12539063  T
Q  114 taaaaatagggaatgattttggttcatcaataatagttgcaatgaaaagagtaataat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  12539064 taaaaatagggaatgattttggttcatcaataatagttgcaatg--aagagtaataat 12539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 16420488 - 16420417
Alignment:
Q  298 gtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaac 371  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||||||||||||   ||||||| ||| ||||||    
T  16420488 gtgtgtgtgaaaaagaataggaaccggtta--ctaataattctcccactaacttatttcctaacaatatggaac 16420417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 29963792 - 29963948
Alignment:
Q  53 ttctatacctaagcagttgaaacaaagcaaaaataacttgtg-tgccctaaatgatactcgataaaaatagggaatgattttggttcatcaataatagtt 151  Q
    ||||||| ||| |||||||||||||||||||| | ||||||| | ||||  ||||||  |||| ||||||||||||||||||||||||||| ||||| ||    
T  29963792 ttctatatctaggcagttgaaacaaagcaaaagt-acttgtgtttccctgtatgatatacgat-aaaatagggaatgattttggttcatcattaataatt 29963889  T
Q  152 gcaatgaaaagagtaataatgataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    |  |||  |||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  29963890 gacatg--aagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg 29963948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 2038298 - 2038136
Alignment:
Q  45 ctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatactcgataaaaatagggaatgattttggttcatcaat 144  Q
    |||||| |||||||| ||| |||||||||||||||||||| || ||||||| ||||  ||||||  |||||||| |||||||||||||||||| |||| |    
T  2038298 ctatttatttctatatctaggcagttgaaacaaagcaaaagta-cttgtgttccctgtatgatatacgataaaa-tagggaatgattttggtt-atcatt 2038202  T
Q  145 aatagttgcaatgaaaagagtaataatgataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    |||| |||  ||||| || |  ||| |||| ||||||||||||||||||| |||||||||||||||||    
T  2038201 aataattgacatgaatagtg--atagtgatgataggattcttacttgtctccctagagtgaatgtttg 2038136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 188799 - 188962
Alignment:
Q  45 ctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatactcgataaaaatagggaatgattttggttcatcaat 144  Q
    |||||| |||||||| ||| |||||||||||||||||||| || ||||||| ||||  ||||||  |||||||| |||||||||||| |||||||||| |    
T  188799 ctatttatttctatatctaggcagttgaaacaaagcaaaagta-cttgtgttccctctatgatatacgataaaa-tagggaatgattctggttcatcatt 188896  T
Q  145 aatagttgcaatgaaaagagtaataatgataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    |||| ||  ||||||  || | |||||||| ||||||||||||||||||| |||| ||||||||||||    
T  188897 aataattaaaatgaa--gatttataatgatgataggattcttacttgtctccctaaagtgaatgtttg 188962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 34518514 - 34518680
Alignment:
Q  45 ctatttgtttctatacctaagcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatactcgataaaaatagggaatgattttggttcatc--- 141  Q
    |||||| |||||||| ||| |||||||||||||||||||  | |||||||| ||||  ||||||  |||| ||||||||||||||||||||||||||       
T  34518514 ctatttatttctatatctaggcagttgaaacaaagcaaaggt-acttgtgttccctgtatgataaacgat-aaaatagggaatgattttggttcatcatt 34518611  T
Q  142 aataatagttgcaatgaaaagagtaataatgataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    | ||||| |||  |||  |||||| |||||||| ||||||||||||||||||| |||||||||||| ||||    
T  34518612 attaataattgacatg--aagagtgataatgatgataggattcttacttgtctccctagagtgaatatttg 34518680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 34518749 - 34518844
Alignment:
Q  284 aaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactct----cccactaactctcttcctaaaaatgtggaactaaat 376  Q
    |||| |||||||| || |||||||||| ||||||||||| |||||| ||||||||||    | | ||||||  ||| ||||||||||||||||||||    
T  34518749 aaagtatagaatgggtatgtgtgaaaaagaataggaacc-gttattataataactctttcactcgctaacttccttgctaaaaatgtggaactaaat 34518844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 37940311 - 37940398
Alignment:
Q  284 aaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaac 371  Q
    |||| |||||||| ||||| ||||||| |||||||||||||||||| |||||||  |  ||||||||   ||||||||||| ||||||    
T  37940311 aaagtatagaatgggtgtgggtgaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaac 37940398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 37940200 - 37940240
Alignment:
Q  172 gataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  37940200 gataataggattcttacttgtctttctagaatgaatgtttg 37940240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 9200 - 9129
Alignment:
Q  298 gtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaactctcttcctaaaaatgtggaac 371  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||||||||||||   ||||||| ||| ||||||    
T  9200 gtgtgtgtgaaaaagaataggaaccggtta--ctaataattctcccactaacttatttcctaacaatatggaac 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 51784539 - 51784578
Alignment:
Q  173 ataataggattcttacttgtcttcctagagtgaatgtttg 212  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  51784539 ataatgggattcttacttgtctttctagagtgaatgtttg 51784578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 28655466 - 28655499
Alignment:
Q  179 ggattcttacttgtcttcctagagtgaatgtttg 212  Q
    ||||||||||||||||| ||||||||||||||||    
T  28655466 ggattcttacttgtctttctagagtgaatgtttg 28655499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University