View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_high_27 (Length: 308)

Name: NF3492_high_27
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_high_27
NF3492_high_27
[»] chr3 (2 HSPs)
chr3 (193-288)||(3470302-3470399)
chr3 (31-74)||(3470139-3470182)
[»] chr5 (2 HSPs)
chr5 (195-292)||(31152362-31152461)
chr5 (24-73)||(31152191-31152240)
[»] chr8 (2 HSPs)
chr8 (195-292)||(8760367-8760466)
chr8 (19-72)||(8760188-8760241)
[»] chr6 (2 HSPs)
chr6 (216-292)||(17366144-17366222)
chr6 (19-73)||(17365945-17365999)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 3470302 - 3470399
Alignment:
Q  193 actgtcgcaagtgcaaccgttaattaaaataattttttctgttaggagtctcatcaagaattttatgtgaaatcgta--cgagatgaattaaaagtga 288  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  3470302 actgtcgcaagtgcaaccgttaattaaaataattttctctgttatgagtctcatcaagaattttatgtgaaatcgtatgagagatgaattaaaagtga 3470399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 3470139 - 3470182
Alignment:
Q  31 acaagagacaccacaaagagagaagcaagaggagtagttattac 74  Q
    |||| ||||||||||||||||||||||||||| |||||||||||    
T  3470139 acaaaagacaccacaaagagagaagcaagaggggtagttattac 3470182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 31152362 - 31152461
Alignment:
Q  195 tgtcgcaagtgcaaccgttaattaaaataattttttctgttaggagtctcatcaagaattttatgtgaaatcgtac--gagatgaattaaaagtgagaaa 292  Q
    ||||||||||| |||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  31152362 tgtcgcaagtgtaaccgttaattaaaataattttcttagttatgagtctcatcaagaattttatgtgaaatcgtacgagagatgaattaaaagtgagaaa 31152461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 31152191 - 31152240
Alignment:
Q  24 tatatatacaagagacaccacaaagagagaagcaagaggagtagttatta 73  Q
    ||||||||||| || |||||||||||||||||||||||| || |||||||    
T  31152191 tatatatacaaaaggcaccacaaagagagaagcaagaggggtcgttatta 31152240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 8760367 - 8760466
Alignment:
Q  195 tgtcgcaagtgcaaccgttaattaaaataattttttctgttaggagtctcatcaagaattttatgtgaaatcgtac--gagatgaattaaaagtgagaaa 292  Q
    ||||||||||| ||||||||||||||||| |||| ||| ||| ||  |||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  8760367 tgtcgcaagtgtaaccgttaattaaaatatttttctctattatgaccctcatcaagaattttatgcgaaatcgtacgagagatgaattaaaagtgagaaa 8760466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8760188 - 8760241
Alignment:
Q  19 tattgtatatatacaagagacaccacaaagagagaagcaagaggagtagttatt 72  Q
    |||| |||||| |||| || |||||||||||||||||||||||| || ||||||    
T  8760188 tattatatatacacaaaaggcaccacaaagagagaagcaagaggggtcgttatt 8760241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 17366144 - 17366222
Alignment:
Q  216 ttaaaataattttttctgttaggagtctcatcaagaattttatgtgaaatcgtac--gagatgaattaaaagtgagaaa 292  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  17366144 ttaaaataattttcttagttatgagtctcatcaagaattttatgtgaaatcgtaccagagaagaattaaaagtgagaaa 17366222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 17365945 - 17365999
Alignment:
Q  19 tattgtatatatacaagagacaccacaaagagagaagcaagaggagtagttatta 73  Q
    |||| ||||||||||| || |||||||||||||||||||||||| || |||||||    
T  17365945 tattatatatatacaaaaggcaccacaaagagagaagcaagaggggtcgttatta 17365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University