View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_30 (Length: 270)
Name: NF3492_high_30
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 14745292 - 14745093
Alignment:
| Q |
54 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatg----gtaactgcagtctagtct |
149 |
Q |
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| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
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| Q |
150 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
249 |
Q |
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| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaacttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
14745093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 17582033 - 17582161
Alignment:
| Q |
12 |
catcatcaaactgttacgattgactgtcggtatnnnnnnntgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagtt |
111 |
Q |
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| T |
17582033 |
catcatcaaactgttacgattgaccgtcgttataaaaaaatgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatagttcaagagtt |
17582132 |
T |
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| Q |
112 |
ttgctttctcatccaatatggtaactgca |
140 |
Q |
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| T |
17582133 |
ttgctttctcatccaatatggtaactgca |
17582161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 17582163 - 17582243
Alignment:
| Q |
169 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
249 |
Q |
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| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
17582243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
58 |
cagtgaaaggtatatctgaattaaatcaa |
86 |
Q |
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| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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