View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_32 (Length: 268)
Name: NF3492_high_32
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_32 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 12315234 - 12315482
Alignment:
| Q |
20 |
gatgaggggataatgtcatagtccaagataggaaagatattcaaactcaaaaagcatttaaaagatgtttaaacatgaattaatattaaacatgcttatc |
119 |
Q |
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| T |
12315234 |
gatgaggggatagtgtcatagtccaagataggaaagatattcggactcaaaaagcatttaaaagatgtttaaacataaattaatattaaacatgcttatc |
12315333 |
T |
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| Q |
120 |
taccnnnnnnncataatgaaatcaaccnnnnnnncatgcttgcaatgatacacgagttgataattgaaacctgatatatataaaaatccaatcaagctat |
219 |
Q |
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| T |
12315334 |
taccaaaaaaacataatcaaatcaaccaaaaaaacatgcttgcaatgatacacgagttgataattgaaacctgatatatataaaaatccaatcaagctat |
12315433 |
T |
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| Q |
220 |
tacaatataagtcccaaaaaatagacttatctatatcttataaatcatc |
268 |
Q |
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| T |
12315434 |
tacaatataagtcccaaaaaatagacttatctatatcttataaatcatc |
12315482 |
T |
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