View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_39 (Length: 249)
Name: NF3492_high_39
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_39 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 42661722 - 42661485
Alignment:
| Q |
14 |
agattcaacatggaaaaactacgaaaagaatcataacgaaggaaaagcaacttcaatatgatnnnnnnn--tcctactatggagatgataggaatgatca |
111 |
Q |
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| T |
42661722 |
agattcaacatggaaaaactacgaaaagaatcataacgaaggaaaagcaacttcaatatgataaaaaaaaatcatactatggagatgataggaatgatca |
42661623 |
T |
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| Q |
112 |
gctactacaagcaccttggatgcaaaaccttgcaacaatattgcatattttttagtgtcaacgagagtattacatatatgattacttataaaaccctaac |
211 |
Q |
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| T |
42661622 |
gctactacaagcaccttggatgcaaaaccttgcaacaatattgcattttttttagtgtcaacgagagtattacatatatgattacttataaaaccctaac |
42661523 |
T |
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| Q |
212 |
tcaaaagccccaaaaattgtaataggaccacgcaactc |
249 |
Q |
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| T |
42661522 |
tcaaaagccccaaaaattgtaataggaccacgcaactc |
42661485 |
T |
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