View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_4 (Length: 541)
Name: NF3492_high_4
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 527
Target Start/End: Original strand, 129497 - 130008
Alignment:
| Q |
16 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129497 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
129596 |
T |
|
| Q |
116 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgccgattg |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
129597 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgctgattg |
129696 |
T |
|
| Q |
216 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtctta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
129697 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtccta |
129796 |
T |
|
| Q |
316 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatcacgaa |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129797 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatcacgaa |
129896 |
T |
|
| Q |
416 |
ttgaaaaggagtgtcaaaagatgggaagtcaagtgaattttcatgtttctattttgctcaaggaagaagcctggtatctctttcagtcaatgactggtga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
129897 |
ttgaaaaggagtgtcaaaagatgggaagtcaagtgaattttcatgtttctattttgctcaaggaagaagcctggtatctctttcagtcaatgacaggtga |
129996 |
T |
|
| Q |
516 |
tgttgtatatga |
527 |
Q |
| |
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|||||||||||| |
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| T |
129997 |
tgttgtatatga |
130008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 527
Target Start/End: Complemental strand, 34555299 - 34554788
Alignment:
| Q |
16 |
atcataacagaaatcatagacaaactaaaggatgatgcgttcaaaagaatcagcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaac |
115 |
Q |
| |
|
||||||| || | ||||||| ||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
34555299 |
atcataaaaggagtcatagagaaactgaaggatgataagttcaaaagaataagcatatgtggaatgggtggagtgggaaaaaccactctggtaaaagaaa |
34555200 |
T |
|
| Q |
116 |
tcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgatttcccaaaatccagattacaagaatatacagagtcaaattgccgattg |
215 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| || ||||||||||| ||||| |
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|
| T |
34555199 |
tcatcaaatctgtagaaaataagttatttgataaagttgtgatggcagtgatatcccaaaatcctgattacaagtatatccaaagtcaaattgctgattg |
34555100 |
T |
|
| Q |
216 |
tttaggcttgagtttgaaaagtgaaagtgtggaaggaagaggcagggaattaatgcaaagattgaaagaaattgatgatgatggaaagactaaagtctta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||||||||||||| ||||||| || |
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|
| T |
34555099 |
tttaggcttgagtttgaaaagtgaaagtgtggatggaagaggcagggaattaattcataggttgaaggaaatcgatgatgatggaaagattaaagtccta |
34555000 |
T |
|
| Q |
316 |
attgtgctcgacgatgtgtggagcgaacttaattttgattgggtaggaattccatctcgagataaccaaaaatgtatcaaaattgtattcacatcacgaa |
415 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||| ||||||||||||||| |
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|
| T |
34554999 |
gttgtgctcgatgatgtgtggagtgagcttaattttgattgggtgggacttccatctcgagataatcaaaaatgtagcaaaataatattcacatcacgaa |
34554900 |
T |
|
| Q |
416 |
ttgaaaaggagtgtcaaaagatgggaagtcaagtgaattttcatgtttctattttgctcaaggaagaagcctggtatctctttcagtcaatgactggtga |
515 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||| | ||||| |
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| T |
34554899 |
atgaaaaggaatgtcaaaagatgggaagccaagtgaattttcatgtttctattttgcttaaggatgaagcctggtatctgtttcaatcaatggcaggtga |
34554800 |
T |
|
| Q |
516 |
tgttgtatatga |
527 |
Q |
| |
|
|||||||||||| |
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|
| T |
34554799 |
tgttgtatatga |
34554788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 34371285 - 34371438
Alignment:
| Q |
68 |
gcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaatctgtagaaaatgagttatttgataaagttgtaatggcagtgat |
167 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| | || ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| || | |
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| T |
34371285 |
gcatttgtgggatgggtggagtggggaaaaccacacttgtgaaagaactcatcaaaactgtagaaaataagttatttgataaagttgtgatggctgttgt |
34371384 |
T |
|
| Q |
168 |
ttcccaaaatccagattacaagaatatacagagtcaaattgccgattgtttagg |
221 |
Q |
| |
|
||||||||||| |||||| |||| || || || |||||||| ||| ||||||| |
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|
| T |
34371385 |
atcccaaaatcctgattacgagaagattcaaagacaaattgctgatggtttagg |
34371438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 34566916 - 34566860
Alignment:
| Q |
67 |
agcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaa |
123 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||| |||| |||||| |||||||| |
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|
| T |
34566916 |
agcatctgtgggatgggcggagtgggaaaaaccacaatggtgaaagaagtcatcaaa |
34566860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 15896591 - 15896535
Alignment:
| Q |
67 |
agcatatgtgggatgggtggagtgggaaaaaccacattggttaaagaactcatcaaa |
123 |
Q |
| |
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||||| ||||||||||| ||||| |||||||||||| |||| |||||| |||||||| |
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|
| T |
15896591 |
agcatttgtgggatgggcggagtaggaaaaaccacactggtgaaagaagtcatcaaa |
15896535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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