View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_high_41 (Length: 245)

Name: NF3492_high_41
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_high_41
NF3492_high_41
[»] chr7 (2 HSPs)
chr7 (1-229)||(46404575-46404803)
chr7 (46-103)||(25268815-25268872)
[»] chr6 (2 HSPs)
chr6 (46-102)||(32136351-32136407)
chr6 (58-100)||(10334676-10334718)
[»] chr1 (4 HSPs)
chr1 (47-103)||(7347690-7347746)
chr1 (46-101)||(50322040-50322095)
chr1 (46-103)||(43391541-43391598)
chr1 (29-85)||(19392214-19392270)
[»] chr3 (1 HSPs)
chr3 (46-100)||(2990989-2991043)
[»] chr8 (2 HSPs)
chr8 (47-103)||(1310127-1310183)
chr8 (66-102)||(27330118-27330154)
[»] chr5 (1 HSPs)
chr5 (36-112)||(27725495-27725571)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46404575 - 46404803
Alignment:
Q  1 aaaacaatgatttgttcaagttccgcaacactacagccgctaatcgacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46404575 aaaacaatgatttgttcaagttccgcaacactacagctgctaatcgacaatattttatactaaatagtgtatcgtggaacaatagatatttgttcaaatt 46404674  T
Q  101 ctgataggttatagtgttatagcatccgatataacaaaactagtttaacatagtcagctgatggtaattaaacaagaggatttacttttgcaaaacaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404675 ctgataggttatagtgttatagcatccgatataacaaaactagtttaacatagtcagctgatggtaattaaacaagaggatttacttttgcaaaacaatt 46404774  T
Q  201 taatatttccattttacgcagctatcaat 229  Q
    ||||||||||||||||||| |||||||||    
T  46404775 taatatttccattttacgcggctatcaat 46404803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 25268872 - 25268815
Alignment:
Q  46 gacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattctg 103  Q
    ||||||||||||||||||||||||||| |   |||||||   ||||||||||||||||    
T  25268872 gacaatattttatactaaatagtgtatagcagaacaataacgatttgttcaaattctg 25268815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 32136351 - 32136407
Alignment:
Q  46 gacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattct 102  Q
    ||||| ||||||||||||||||||||||||| |||||  || ||||||| |||||||    
T  32136351 gacaacattttatactaaatagtgtatcgtggaacaacggagatttgtttaaattct 32136407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 10334676 - 10334718
Alignment:
Q  58 tactaaatagtgtatcgtgaaacaatagatatttgttcaaatt 100  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  10334676 tactaaatagtgtatcgtggaacaagagctatttgttcaaatt 10334718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 7347746 - 7347690
Alignment:
Q  47 acaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattctg 103  Q
    |||||||||| ||||||||||||||| |  |||||||||  ||||||||||||||||    
T  7347746 acaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctg 7347690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 50322095 - 50322040
Alignment:
Q  46 gacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattc 101  Q
    |||||||||||||||||||| |||||||||  ||||||||   |||||||||||||    
T  50322095 gacaatattttatactaaattgtgtatcgtagaacaatagtggtttgttcaaattc 50322040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 43391541 - 43391598
Alignment:
Q  46 gacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattctg 103  Q
    ||||| ||||| |||||||||||| |||| | ||||||||  ||||||||||||||||    
T  43391541 gacaacattttgtactaaatagtgcatcggggaacaatagcgatttgttcaaattctg 43391598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 19392270 - 19392214
Alignment:
Q  29 cactacagccgctaatcgacaatattttatactaaatagtgtatcgtgaaacaatag 85  Q
    ||||||| | |||| | ||||||||||| |||| |||||| ||||||||||||||||    
T  19392270 cactacaactgctatttgacaatattttgtacttaatagtatatcgtgaaacaatag 19392214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 2990989 - 2991043
Alignment:
Q  46 gacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaatt 100  Q
    ||||| ||||| |||||||||| |||||||| ||||| ||| |||||||||||||    
T  2990989 gacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 1310183 - 1310127
Alignment:
Q  47 acaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattctg 103  Q
    ||||||| || ||||||||||||||||  | ||||||||  ||||||||||||||||    
T  1310183 acaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattctg 1310127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 27330118 - 27330154
Alignment:
Q  66 agtgtatcgtgaaacaatagatatttgttcaaattct 102  Q
    ||||||||||||||||||||  |||||||||||||||    
T  27330118 agtgtatcgtgaaacaatagcaatttgttcaaattct 27330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 27725571 - 27725495
Alignment:
Q  36 gccgctaatcgacaatattttatactaaatagtgtatcgtgaaacaatagatatttgttcaaattctgataggttat 112  Q
    ||||||| | ||||||||||| |||||||||||| || | | |||||| |  |||||||||||||||| || |||||    
T  27725571 gccgctatttgacaatattttgtactaaatagtggattgcggaacaattgtgatttgttcaaattctgctacgttat 27725495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University