View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_high_45 (Length: 227)

Name: NF3492_high_45
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_high_45
NF3492_high_45
[»] chr3 (7 HSPs)
chr3 (1-220)||(39184631-39184851)
chr3 (62-122)||(14233404-14233464)
chr3 (62-220)||(20790742-20790891)
chr3 (142-220)||(14233301-14233379)
chr3 (62-122)||(2251565-2251625)
chr3 (142-220)||(2251459-2251540)
chr3 (142-213)||(52754127-52754197)
[»] chr5 (4 HSPs)
chr5 (1-220)||(27593027-27593250)
chr5 (62-122)||(30326462-30326522)
chr5 (176-215)||(30326588-30326627)
chr5 (142-213)||(9025477-9025546)
[»] chr8 (5 HSPs)
chr8 (1-220)||(45245784-45246007)
chr8 (142-220)||(361500-361580)
chr8 (142-220)||(23684550-23684630)
chr8 (62-122)||(361605-361665)
chr8 (79-122)||(23684655-23684698)
[»] chr1 (8 HSPs)
chr1 (142-220)||(21467244-21467323)
chr1 (142-220)||(19102274-19102354)
chr1 (62-122)||(19102189-19102249)
chr1 (62-122)||(21467159-21467219)
chr1 (62-122)||(22539904-22539964)
chr1 (142-208)||(15530656-15530722)
chr1 (62-122)||(15530747-15530807)
chr1 (142-220)||(22539800-22539879)
[»] chr6 (2 HSPs)
chr6 (62-122)||(21986823-21986883)
chr6 (142-220)||(21986720-21986798)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39184851 - 39184631
Alignment:
Q  1 gtaacataaccaaataaagtcatattgagtcacaacatgatnnnnnnnngatagatcgacagtgattttatgaagtgatgtttctattcctctcattcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39184851 gtaacataaccaaataaagtcatattgagtcacaacatgattaaaaa--gatagatcgacagtaattttatgaagtgatgtttctattcctcttattcat 39184754  T
Q  101 gagtataaagaaattaaaccag---gnnnnnnnnnnnnnnngatattttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgc 197  Q
    ||||||||||||||||||||||                   ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  39184753 gagtataaagaaattaaaccagaaaaaaataagatgaaaaagatattttaacttgagagaaatggttaggaaaaaactaaggagtgggtgctttgaccgt 39184654  T
Q  198 gagagtatatggaatattcttcg 220  Q
    ||||||||||| |||||| ||||    
T  39184653 gagagtatatgaaatattgttcg 39184631  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 14233464 - 14233404
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  14233464 gtgattttatgaagagatgtttctattcctctcattcatgagaataaagaaactaacccag 14233404  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 20790891 - 20790742
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccaggnnnnnnnnnnnnnnngatattttaacttgagagaaatg 161  Q
    |||||||||||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||                || ||||||||||||||||||||    
T  20790891 gtgattttatgaagagatgtttatattcctctcattcatgtgaataaagaaactaaaccag-----------aaaaagaaattttaacttgagagaaatg 20790803  T
Q  162 attaggaaaaaac--taaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
     |||||||||||   ||||||||| || ||||||||| ||||||||||| |||||| ||||    
T  20790802 gttaggaaaaaaaaataaggagtgtgttctttgaccgtgagagtatatgaaatattgttcg 20790742  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 14233379 - 14233301
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||   |||||||||| |||||| ||||    
T  14233379 attttaacttgagagaaatggttaggaacaaaataaggagtgtgtgctttgaccataagagtatatgaaatattgttcg 14233301  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 2251625 - 2251565
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| |||||||||||||||||| |||||| | ||||||||| ||||||||    
T  2251625 gtgattttatgaagagatgtttctattcctctctttcatgtgaataaagaaactaaaccag 2251565  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 2251540 - 2251459
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaac---taaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| |||||||||||    ||||||||| ||| |||||||  |||||||||||||||||| ||||    
T  2251540 attttaacttgagagaaatggttaggaaaaaaaaaataaggagtgtgtgttttgaccatgagagtatatggaatattgttcg 2251459  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 52754197 - 52754127
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgcgagagtatatggaata 213  Q
    |||||||| ||||||||||||| |||||||||  || ||||| ||||||| |||  ||||||||||||||||    
T  52754197 attttaacatgagagaaatgataaggaaaaaa-aaatgagtgtgtgcttttaccatgagagtatatggaata 52754127  T

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Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27593027 - 27593250
Alignment:
Q  1 gtaacataaccaaataaagtcatattgagtcacaacatgatnnnnnnnngatagatcgacagtgattttatgaagtgatgtttctattcctctcattcat 100  Q
    ||||||||||||||||||||||||||||||||| |||||||        |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  27593027 gtaacataaccaaataaagtcatattgagtcacgacatgataaaaaaa-gatagatcgacaatgattttatgaagtgatgtttctattcctctcattaat 27593125  T
Q  101 gagtataaagaaattaaaccaggnnnnnnnnnnnnnnn-----gatattttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgacc 195  Q
    ||||||||||||||||||||||                     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27593126 gagtataaagaaattaaaccagaaaaaaaaataagatgaaaaagatattttaacttgagagaaatggttaggaaaaaactaaggagtgagtgctttgacc 27593225  T
Q  196 gcgagagtatatggaatattcttcg 220  Q
    | ||||||||||| |||||| ||||    
T  27593226 gtgagagtatatgaaatattgttcg 27593250  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 30326462 - 30326522
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | | ||||||| ||||||||    
T  30326462 gtgattttatgaagagatgtttctattcctctcattcatgtgaacaaagaaactaaaccag 30326522  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 30326588 - 30326627
Alignment:
Q  176 aaggagtgagtgctttgaccgcgagagtatatggaatatt 215  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30326588 aaggagtgtgtgctttgaccgtgagagtatatggaatatt 30326627  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 9025546 - 9025477
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgcgagagtatatggaata 213  Q
    |||||||| ||||||||||||| ||| |||||  || ||||| ||||||| |||  ||||||||||||||||    
T  9025546 attttaacatgagagaaatgataagggaaaaa--aatgagtgtgtgcttttaccatgagagtatatggaata 9025477  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45246007 - 45245784
Alignment:
Q  1 gtaacataaccaaataaagtcatattgagtcacaacatgatnnnnnnnngatagatcgacagtgattttatgaagtgatgtttctattcctctcattcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||        ||||  |||| ||||||||||||||||||||||||||||||||||||||||    
T  45246007 gtaacataaccaaataaagtcatattgagtcacaacatgataaaaaaa-gatacctcgagagtgattttatgaagtgatgtttctattcctctcattcat 45245909  T
Q  101 gagtataaagaaattaaaccag-----gnnnnnnnnnnnnnnngatattttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgacc 195  Q
    ||||||||||||||||||||||                     ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  45245908 gagtataaagaaattaaaccagaaaaaaaaataagatgaaaaagatattttaacttgagagaaatggttaggaaaaaactaaagagtgggtgctttgacc 45245809  T
Q  196 gcgagagtatatggaatattcttcg 220  Q
    | ||||||||||| |||||| ||||    
T  45245808 gtgagagtatatgaaatattgttcg 45245784  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 361580 - 361500
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaac--taaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| |||||||||||   ||||||||| |||||||||||| |||||||||||||||||| ||||    
T  361580 attttaacttgagagaaatggttaggaaaaaaaaataaggagtgtgtgctttgaccgtgagagtatatggaatattgttcg 361500  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 23684630 - 23684550
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaa--ggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| |||||||||||  ||  |||||| |||||||||||| ||||||||||| |||||| ||||    
T  23684630 attttaacttgagagaaatggttaggaaaaaaaaaaaaggagtgtgtgctttgaccgtgagagtatatgaaatattgttcg 23684550  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 361665 - 361605
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    ||||||| |||||| ||||||| |||| |||||||||||| | ||||||||| ||||||||    
T  361665 gtgatttgatgaagagatgtttatatttctctcattcatgtgaataaagaaactaaaccag 361605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 23684698 - 23684655
Alignment:
Q  79 tgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||    
T  23684698 tgtttctattcctctcattcatgtgaataaagaaactaaaccag 23684655  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 21467244 - 21467323
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaac-taaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| |||||||||||  ||||||||| |||||||||||| |||||||||||||||||| ||||    
T  21467244 attttaacttgagagaaatggttaggaaaaaaaataaggagtgtgtgctttgaccgtgagagtatatggaatattgttcg 21467323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 19102274 - 19102354
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaac--taaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| |||||||||||   ||||||||| |||||||||||| |||||||||||||||||| ||||    
T  19102274 attttaacttgagagaaatggttaggaaaaaaaaataaggagtgtgtgctttgaccgtgagagtatatggaatattgttcg 19102354  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 19102189 - 19102249
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||    
T  19102189 gtgattttatgaagagatgtttctattcctctcattcatgtgaataaagaaactaaaccag 19102249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 21467159 - 21467219
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||    
T  21467159 gtgattttatgaagagatgtttctattcctctcattcatgtgaataaagaaactaaaccag 21467219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 22539964 - 22539904
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||    
T  22539964 gtgattttatgaagagatgtttctattcctctcattcatgtgaataaagaaactaaaccag 22539904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 15530722 - 15530656
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgcgagagtatatg 208  Q
    |||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||| |||| ||||||    
T  15530722 attttaacttgagagaaatggttaggaaaaaaataaagagtgtgtgctttgaccgtgagattatatg 15530656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 15530807 - 15530747
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | || |||||| ||||||||    
T  15530807 gtgattttatgaagagatgtttctattcctctcattcatgtgaatgaagaaactaaaccag 15530747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 22539879 - 22539800
Alignment:
Q  142 attttaacttgagagaaatgattaggaa-aaaactaaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| ||||||| |||| ||||||  | |||||||||||| ||||||||||| |||||| ||||    
T  22539879 attttaacttgagagaaatggttaggaaaaaaaataaggaacgtgtgctttgaccgtgagagtatatgaaatattgttcg 22539800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 21986883 - 21986823
Alignment:
Q  62 gtgattttatgaagtgatgtttctattcctctcattcatgagtataaagaaattaaaccag 122  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||    
T  21986883 gtgattttatgaagagatgtttctattcctctcattcatgtgaataaagaaactaaaccag 21986823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 21986798 - 21986720
Alignment:
Q  142 attttaacttgagagaaatgattaggaaaaaactaaggagtgagtgctttgaccgcgagagtatatggaatattcttcg 220  Q
    |||||||||||||||||||| ||||| |||||  || ||||| |||||||||||| ||||||||||| |||||| ||||    
T  21986798 attttaacttgagagaaatggttagggaaaaaaaaatgagtgtgtgctttgaccgtgagagtatatgaaatattgttcg 21986720  T

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