View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_high_5 (Length: 540)
Name: NF3492_high_5
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 338 - 527
Target Start/End: Original strand, 24729800 - 24729989
Alignment:
| Q |
338 |
tttctttgaatggccaatgttcatgatcatgatgacgttcaaggttttaattttattgagattgtttcttctagtcaagaacattgattgtatcagaacc |
437 |
Q |
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| T |
24729800 |
tttctttgaatggccaatgttcatgatcatgatgacgttcaaggttttaattttattgagattgtttcttctagtcaagaac----attgtatcaaaacc |
24729895 |
T |
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| Q |
438 |
atattggataaacaccagaaaa----attaattgtttctttatttttcagtaatttgaatgcatgaagctgtgtgttctgtatgcatctgtgct |
527 |
Q |
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| T |
24729896 |
atattggataaacaccagaaaactttgttgattgtttctttatttttcagtaatttgaatgcatgaagctgtgtgttctgtatgcatctgtgct |
24729989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 24728601 - 24728779
Alignment:
| Q |
4 |
gttgtttattagtctaatgacttctagtggtgtttgaatggaagggaataatactattaattggctcatcattatcccattcttatgacatattttgtaa |
103 |
Q |
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| T |
24728601 |
gttgtttattagtataatgacttctagtggtgtttgaatggaagggaataatactattaattggagtatcattatcccattcttatgaaatattctgtaa |
24728700 |
T |
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| Q |
104 |
tctttttactacaagactatatcgttaaaagcacgactatgtctccctgtgttttaatatttgatcactatttgagtag |
182 |
Q |
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| T |
24728701 |
tctttttaatacaagactatagcgttaaaagcacgactatgtctccctgtgttttaatatttgatcactatttgagtag |
24728779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 24728915 - 24729040
Alignment:
| Q |
224 |
aattaggaatttatgtcagtaacttggagaaagcacttaggaattaggatggtcgttattggtccaaatgctgaaagtaaataagaggtttatcactctg |
323 |
Q |
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| T |
24728915 |
aattaggaatttatgtcagtaacttggagaaagcagttaggaattaggatggttgttattggtccaaatgctgaaagtaaataagaggtttatcactctg |
24729014 |
T |
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| Q |
324 |
ttttcctttttgtgtttctttgaatg |
349 |
Q |
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| T |
24729015 |
ttttcctttttgtgtttctttgaatg |
24729040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 24728817 - 24728847
Alignment:
| Q |
159 |
aatatttgatcactatttgagtagtttgttt |
189 |
Q |
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| T |
24728817 |
aatatttgatcactatttgagtagtttgttt |
24728847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 9634406 - 9634336
Alignment:
| Q |
374 |
gttcaaggttttaattttattgagattgtttcttctagtcaagaacattgattgtatcagaaccatattggataa |
448 |
Q |
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| T |
9634406 |
gttcaaggttttaattttattcagattgtttcttatagtcaataac----attgtatcagaaccatattggataa |
9634336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 9636980 - 9636946
Alignment:
| Q |
315 |
atcactctgttttcctttttgtgtttctttgaatg |
349 |
Q |
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| T |
9636980 |
atcactctgttttcctttttgtgtttctttgaatg |
9636946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 31572298 - 31572246
Alignment:
| Q |
477 |
ttttcagtaatttgaatgcatgaagctgtgtgttctgtatgcatctgtgctcc |
529 |
Q |
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| T |
31572298 |
ttttcaataattggaatgcatgaagttgtgtgttcagtatgcatctgtgctcc |
31572246 |
T |
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