View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_11 (Length: 444)
Name: NF3492_low_11
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 136 - 429
Target Start/End: Original strand, 18775895 - 18776189
Alignment:
| Q |
136 |
tgctggagacatttacctgaagcaatggtagctaggatgacaaggagattaacacagtttgagatgtggtttgccatttcacaacaattattctttgcaa |
235 |
Q |
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| T |
18775895 |
tgctggagacatttacctgaagcaaaggtagctaggatgacaaggagattaatacagtttgagatgtggtttgccatttcacaacaattattctttgcaa |
18775994 |
T |
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| Q |
236 |
agtttgttttgttgatggtggtt-acggtcaaaagtggtgtatttataataccagacttctgaagcaatggtaactattttatgtattaatattactatc |
334 |
Q |
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| T |
18775995 |
agtttgttttgttgatggtggtttacggtcaaaagtggtgtatttataataccagacttctgaagcaatggtagctattttatgtattaatattactatc |
18776094 |
T |
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| Q |
335 |
ctcaattttttcataataattatcctcgatatatgatattttggtcaaatannnnnnnnaaggaatattctggtcaaatatgtcactgttatttt |
429 |
Q |
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| T |
18776095 |
ctcaattttttcataataattatcctcgatatatgatattttggtcaaatattttttttaaggaatattctggtcaaatatgtcactgttatttt |
18776189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 18775811 - 18775865
Alignment:
| Q |
42 |
caaatatatgtttagttcttcaaatatatcgtttatttgcttttagttcttgtat |
96 |
Q |
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| T |
18775811 |
caaatatatgtttagttcttcaaatatatcgtttatttgcttttagttcttgtat |
18775865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 18790411 - 18790501
Alignment:
| Q |
136 |
tgctggagacatttacctgaagcaatggtagctaggatgacaaggagattaacacagtttgagatgtggtttgccatttcacaacaattat |
226 |
Q |
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| T |
18790411 |
tgctggagacacttacctgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatttgataacaattat |
18790501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 18781780 - 18781847
Alignment:
| Q |
157 |
gcaatggtagctaggatgacaaggagattaacacagtttgagatgtggtttgccatttcacaacaatt |
224 |
Q |
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| T |
18781780 |
gcaatggtagctaggatgacaaggaaattaaaccagattgagaagtggtttgccatttgataacaatt |
18781847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 18816919 - 18816862
Alignment:
| Q |
157 |
gcaatggtagctaggatgacaaggagattaacacagtttgagatgtggtttgccattt |
214 |
Q |
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| T |
18816919 |
gcaatggtagctagaatgagaaggagattaaaccagtttgagaagtggtttgccattt |
18816862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 18762594 - 18762659
Alignment:
| Q |
148 |
ttacctgaagcaatggtagctaggatgacaaggagattaacacagtttgagatgtggtttgccatt |
213 |
Q |
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| T |
18762594 |
ttacctgcagcaatggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccatt |
18762659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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