View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_12 (Length: 430)
Name: NF3492_low_12
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 25898394 - 25898802
Alignment:
| Q |
1 |
ttaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataacaggtatttacaac |
100 |
Q |
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| T |
25898394 |
ttaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataacaggtatttacaac |
25898493 |
T |
|
| Q |
101 |
aaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtgagttaggaggatc |
200 |
Q |
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| T |
25898494 |
aaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtgagttaggaggatc |
25898593 |
T |
|
| Q |
201 |
ctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcattcggacccctattt |
300 |
Q |
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| T |
25898594 |
ctcaagatcaaagaccaaactatccccttgacgcaatttactatccttcagaaatttgttccaatcttcctctaaatatttttcattcggacccctattt |
25898693 |
T |
|
| Q |
301 |
aaagtgataagtttgccgtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgtgtcgggaatgacattgatcgagatcgtattgg |
400 |
Q |
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| T |
25898694 |
aaagtgataagtttgcagtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgtgtcgggaatgacattgatcgagatcatattgg |
25898793 |
T |
|
| Q |
401 |
ggaagtgct |
409 |
Q |
| |
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| T |
25898794 |
ggaagtgct |
25898802 |
T |
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Back To:
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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 409
Target Start/End: Original strand, 37422999 - 37423238
Alignment:
| Q |
169 |
acaatctcaacaaatagtgagttaggaggatcctcaagatcaaagaccaaactatcctcttgacgcaatttactatccttcagaaatttgttccaatctt |
268 |
Q |
| |
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|||||||||||||||| ||| | ||||| || | || || |||| ||| |||||| |||||||||||| |||| |||||||||||||||||||| | |
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| T |
37422999 |
acaatctcaacaaataatgactccggagggtcttgcagttcgaagaacaacctatccctttgacgcaatttgttatc-ttcagaaatttgttccaatcct |
37423097 |
T |
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| Q |
269 |
cctctaaatatttttcattcggacccctatttaaagtgataagtttgccgtcatattttttggcggtattccaatcctgcaatgtaatgctctcttgtgt |
368 |
Q |
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| ||| |||||||||||| |||||||| ||| ||||| ||||||||| || |||| ||| ||||||||||| | ||||||||| | | ||||| |
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| T |
37423098 |
ctcctagatatttttcatttggacccctgtttgaagtggtaagtttgcactcgtattgtttttgggtattccaattcactaatgtaatggtgtactgtgt |
37423197 |
T |
|
| Q |
369 |
gtcgggaatgacattgatcgagatcgtattggggaagtgct |
409 |
Q |
| |
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||| |||| || ||||| |||||| ||||||||||||||| |
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| T |
37423198 |
gtccggaagtacgttgatggagatcatattggggaagtgct |
37423238 |
T |
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