View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3492_low_13 (Length: 426)
Name: NF3492_low_13
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_13 |
 | |
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| [»] scaffold1940 (1 HSPs) |
| | |
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| [»] scaffold0281 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 4056538 - 4056136
Alignment:
| Q |
19 |
gaaatagtaaccgagatttgacattaaagttgctttatagcaaaataattctgtaaccgaaaattctgccaaactaataatgtagtaaacaatatatatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056538 |
gaaatagtaaccgagatttgacattaaagttgcttcatggcaaa-taattctgtaaccgaaaattctgccaaactaataatgtagtaaacaatatatatg |
4056440 |
T |
|
| Q |
119 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4056439 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
4056340 |
T |
|
| Q |
219 |
taaaaagtaacacaatcaa-nnnnnnnngtgacttaaaatctcttctaaactttaattt-nnnnnnnttaatggttcnnnnnnnnaccaattcactctgt |
316 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
4056339 |
taaaaagtaacacagccaatttttttttgtgacttaaaatttcttctaaactttaatttaaaaaaatttaatggttcttttttttaccaattcactctgt |
4056240 |
T |
|
| Q |
317 |
gaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttc----tcatttaggtttttattggttcttct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4056239 |
gaaatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattggttcttct |
4056140 |
T |
|
| Q |
413 |
tcat |
416 |
Q |
| |
|
|||| |
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|
| T |
4056139 |
tcat |
4056136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 25067269 - 25067671
Alignment:
| Q |
19 |
gaaatagtaaccgagatttgacattaaagttgctttatagcaaaataattctgtaaccgaaaattctgccaaactaataatgtagtaaacaatatatatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067269 |
gaaatagtaaccgagatttgacattaaagttgcttcatggcaaa-taattctgtaaccgaaaattctgccaaactaataatgtagtaaacaatatatatg |
25067367 |
T |
|
| Q |
119 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25067368 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
25067467 |
T |
|
| Q |
219 |
taaaaagtaacacaatcaa-nnnnnnnngtgacttaaaatctcttctaaactttaattt-nnnnnnnttaatggttcnnnnnnnnaccaattcactctgt |
316 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
25067468 |
taaaaagtaacacagccaatttttttttgtgacttaaaatttcttctaaactttaatttaaaaaaatttaatggttcttttttttaccaattcactctgt |
25067567 |
T |
|
| Q |
317 |
gaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttc----tcatttaggtttttattggttcttct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25067568 |
gaaatagatctataaattaggtatattggttagtataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattggttcttct |
25067667 |
T |
|
| Q |
413 |
tcat |
416 |
Q |
| |
|
|||| |
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|
| T |
25067668 |
tcat |
25067671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 795005 - 794602
Alignment:
| Q |
19 |
gaaatagtaaccgagatttgacattaaagttgctttatagcaaaataattctgtaaccgaaaattctgccaaactaataatgtagtaaacaatatatatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
795005 |
gaaatagtaaccgagatttgacattaaagttgcttcatagcaaa-taattctgtaactgaaaattctgccaaactaataatgtagtaaacaatatatatg |
794907 |
T |
|
| Q |
119 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
794906 |
gtattaaacaaatttagcattaaagttctaaatcagtcaaacaaattgtagccgaaaatatcttcaaaaataatagtagaagcatttgacataaatggta |
794807 |
T |
|
| Q |
219 |
taaaaagtaacacaatcaa--nnnnnnnngtgacttaaaatctcttctaaactttaatttnnnnnnnttaatggttc-nnnnnnnnaccaattcactctg |
315 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
794806 |
taaaaagtaacacagccaattttttttttgtgacttataatttcttctaaactttaatttaaaaaaattaatggttctatttttttaccaattcactctg |
794707 |
T |
|
| Q |
316 |
tgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttc----tcatttaggtttttattggttcttc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
794706 |
tgaaatagatctataaattaggtatattggttagcataatttcacatcacaacttcaatcacacttctttctctttcatttaggtttttattgtttcttc |
794607 |
T |
|
| Q |
412 |
ttcat |
416 |
Q |
| |
|
||||| |
|
|
| T |
794606 |
ttcat |
794602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 19194268 - 19194210
Alignment:
| Q |
147 |
taaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcattt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19194268 |
taaatcagtcaaacaaattgtaaccgaaaatatcttcaaaaataatagtagaagcattt |
19194210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1940 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1940
Description:
Target: scaffold1940; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 952 - 988
Alignment:
| Q |
128 |
aaatttagcattaaagttctaaatcagtcaaacaaatt |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
952 |
aaatttagcattaaagtt-taaatcagtcaaacaaatt |
988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 21791 - 21755
Alignment:
| Q |
128 |
aaatttagcattaaagttctaaatcagtcaaacaaatt |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21791 |
aaatttagcattaaagtt-taaatcagtcaaacaaatt |
21755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 50338 - 50374
Alignment:
| Q |
128 |
aaatttagcattaaagttctaaatcagtcaaacaaatt |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50338 |
aaatttagcattaaagtt-taaatcagtcaaacaaatt |
50374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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