View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_14 (Length: 414)
Name: NF3492_low_14
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 196 - 384
Target Start/End: Original strand, 230220 - 230408
Alignment:
| Q |
196 |
gggtggaggagaagattgaacaggtggaggggaggcttgaggagtggttgggggtgtattagaaggaggagtgggtggtgctggagatgagtttggggag |
295 |
Q |
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| T |
230220 |
gggtggaggagaagattgaacaggtggaggggaggcttgaggagtggttgggggtgtattagcaggaggagtgggtggtgctggagatgagtttggggag |
230319 |
T |
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| Q |
296 |
gtggatggagcttgttgggctcctacgctggaaaacacaacgcagatcaaaccaattaccaccaaaactatatgatgtgtgcccatctt |
384 |
Q |
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| T |
230320 |
gtggatggagcttgttgggctcctacgctggaaaacacaacgcagatcaaaccaattacaaccaaaactatatgatgtgtgcccatctt |
230408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 230025 - 230139
Alignment:
| Q |
1 |
agcagggggaggagagaatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggaggagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230025 |
agcagggggaggagagaatggtggaggtgaggcagggggtggtgatgcaggtggtggagtagactgaacaggtggaggagtgagtggggttggaggagga |
230124 |
T |
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| Q |
101 |
gattgctgaacaggt |
115 |
Q |
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| T |
230125 |
gattgctgaacaggt |
230139 |
T |
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