View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3492_low_19 (Length: 352)
Name: NF3492_low_19
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_19 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 46629828 - 46630169
Alignment:
| Q |
1 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46629828 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
46629927 |
T |
|
| Q |
101 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46629928 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
46630027 |
T |
|
| Q |
201 |
gctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46630028 |
gctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatctt |
46630127 |
T |
|
| Q |
301 |
cttcttacagtaaagatcacatcaaattcatggttactgatg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630128 |
cttcttacagtaaagatcacatcaaattcatggttactgatg |
46630169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 341
Target Start/End: Original strand, 46637648 - 46637990
Alignment:
| Q |
2 |
aagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggaga |
101 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| | |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46637648 |
aagaggttggcactctgagcaaccaaagtatcgaggctatgttacctccaatgataatctggtttttcttattcctggtgttgagaagttttcaaggaga |
46637747 |
T |
|
| Q |
102 |
aaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtcctta---aagaagaagaag |
198 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| | || | |||||||||||| |
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|
| T |
46637748 |
aaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctgaaccgaatattctcctgctcaaagaagaagaagaag |
46637847 |
T |
|
| Q |
199 |
ctgctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatc |
298 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| |||||| ||||||||| | ||||||| |||||||||||||| ||||||||||||||||| || || |
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|
| T |
46637848 |
aagccaaagttggtagctgcaatgaggaagagccagaaaatggatcaaatgaagatgatttgtctgacgatcatcgtcaatgttacctcaagccccggtc |
46637947 |
T |
|
| Q |
299 |
ttcttcttacagtaaagatcacatcaaattcatggttactgat |
341 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
46637948 |
ttctacttacagtaaagatcatatcaaattcttggttattgat |
46637990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 46618941 - 46619284
Alignment:
| Q |
1 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| | | |||||| ||| ||||||||||||||||||||||||| |||||| |||||||||| ||||| |
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|
| T |
46618941 |
caagaggttggcactctgagcaaccaaagtatcgatgctatgttacttccaatgattatctggtttttcttattcccggtgttgagaagttttcgaggag |
46619040 |
T |
|
| Q |
101 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
200 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||| |
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|
| T |
46619041 |
aaaacttgtgaaaggtgaccattactttgattctgttagtgatgtcttgagaaaagtagttgctgaaccgaatattctcgtgctcaaagaagaagaagga |
46619140 |
T |
|
| Q |
201 |
g---ctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgat |
297 |
Q |
| |
|
| | ||| | |||||||||||||||||||| | ||||| ||||||||| | ||||| | ||| | ||||||||| | |||||||||||||| |||| |
|
|
| T |
46619141 |
gaagccaaatttggtagctgcaatgaggaagatcccgaaaatggatcaaatgaagatgatctgtctaaggatcatcgctattgttacctcaagccccgat |
46619240 |
T |
|
| Q |
298 |
cttcttcttacagtaaagatcacatcaaattcatggttactgat |
341 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
46619241 |
cttctacttacagtaaagatcatatcaaattcatggttattgat |
46619284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 46176532 - 46176197
Alignment:
| Q |
1 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| | | |||||||| | |||||| |||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
46176532 |
caagaggttggcactctgagcaaccaaagtatcgaggctatcttacctcccaagattatttggtttttctcattcctggtgttgagaagttttcaaggag |
46176433 |
T |
|
| Q |
101 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
200 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
46176432 |
aaaacttgtgaaaggtgatcattactttgattatgttagtgatgtcttgagcaaagtagtagctgaacctaatattctcgtgctcgaagaagaa------ |
46176339 |
T |
|
| Q |
201 |
gctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatctt |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||||| | ||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
46176338 |
gctaaagttggtagctacaatgaggaagaaccagaaaagggatcaaatgaagatgatttatctgacgatcatcgtcaatgttacctcaagcccaaatctg |
46176239 |
T |
|
| Q |
301 |
ct-tcttacagtaaagatcacatcaaattcatggttactgat |
341 |
Q |
| |
|
|| | |||| ||||||||| || ||||||||||||| |||| |
|
|
| T |
46176238 |
ctaacctacaataaagatcatataaaattcatggttattgat |
46176197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 46643156 - 46642827
Alignment:
| Q |
1 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||| ||| | |||||||||| | ||||||||||| |||||||||||||||||| | |||||||| ||||| |
|
|
| T |
46643156 |
caagaggttggcactctgagcaaccaatgtatcaaggctatgttacctccaaagattatctggtctttcttattcctggtgttgataagttttcgaggag |
46643057 |
T |
|
| Q |
101 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
200 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| | ||| |||| |||||| |
|
|
| T |
46643056 |
aaaacttgtgaaaggtgatcattactttgattctgttagcgatgtcttgaacaaagtggtagctgaaccgaatattcttgagcttgaagaggaagaa--- |
46642960 |
T |
|
| Q |
201 |
gctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatctt |
300 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||| || |||||| | |||||||||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
46642959 |
tctaaagttcacagctgcaatgaggaacagccagaaaagggaacaaatgaagatgatttatcggatgatcatcgtcaatgttacctcaagccccgatctt |
46642860 |
T |
|
| Q |
301 |
cttcttacagtaaagatcacatcaaattcatgg |
333 |
Q |
| |
|
| | |||| ||||||||| || ||||| |||| |
|
|
| T |
46642859 |
ttacctacaataaagatcatataaaattaatgg |
46642827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 31 - 340
Target Start/End: Complemental strand, 18376226 - 18375917
Alignment:
| Q |
31 |
atcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggagaaaactagtgaaaggtaaccattactttga |
130 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
18376226 |
atcgaggatatgctaccttcgatgattatctggtttttcttattcccggggttgagaagttttcaagaagaaaactagtgaaaggtgaccattactttga |
18376127 |
T |
|
| Q |
131 |
ttcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagctgctaaagtcggtagctgcaatgaggaagag |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18376126 |
ttcagttagcgatgttttgaaaaaagtagtagctgaaccgaatattctcgtcctcaaagaagaagaagcagctaaagtcggtagctgcaatgaggaagag |
18376027 |
T |
|
| Q |
231 |
ctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatcttcttcttacagtaaagatcacatcaaattca |
330 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
18376026 |
ctagaaaaaggatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatcttctacttacagtaaagatcacatgaaattca |
18375927 |
T |
|
| Q |
331 |
tggttactga |
340 |
Q |
| |
|
|||||||||| |
|
|
| T |
18375926 |
tggttactga |
18375917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 15769571 - 15769237
Alignment:
| Q |
1 |
caagaggatggcactctgagcaaacaaagtatcgaggatgtgttacctccgatgattatctggtttttcttattcctggtgttcagaagttttcaaggag |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||| | | |||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15769571 |
caagaggttggcactctgagcaaccaaagaatcgaggctatattacctccaaagattatttggtttttcttattcctggtgttgagaagttttcgaggag |
15769472 |
T |
|
| Q |
101 |
aaaactagtgaaaggtaaccattactttgattcagttagcgatgtcttgaaaaaagtagtagctgaaccgaatattctcgtccttaaagaagaagaagct |
200 |
Q |
| |
|
||||| || |||||| | |||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||| || || ||||||||| |
|
|
| T |
15769471 |
gaaacttgtaaaaggtcatcattactttgattctgttagtgatgtcttgagcaaagtagcagctgaaccgaatattctcgtgct---cgaggaagaagct |
15769375 |
T |
|
| Q |
201 |
gctaaagtcggtagctgcaatgaggaagagctagaaaagagatcaaatggacatgatttatctgacgatcatcgccaatgttacctcaagcctcgatctt |
300 |
Q |
| |
|
| |||| |||||||| |||||||||| || ||||||| ||||||||| | ||||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
15769374 |
g---aagttggtagctgtaatgaggaagggccagaaaagggatcaaatgaagatgatgtatctgatgatcatcgccaatgttacctcaagccccgatctt |
15769278 |
T |
|
| Q |
301 |
cttcttacagtaaagatcacatcaaattcatggttactgat |
341 |
Q |
| |
|
|| |||||| ||| |||| || || |||||||||| |||| |
|
|
| T |
15769277 |
ctacttacaataatgatcgtataaagttcatggttattgat |
15769237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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