View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_low_20 (Length: 350)

Name: NF3492_low_20
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_low_20
NF3492_low_20
[»] chr2 (5 HSPs)
chr2 (1-120)||(10582551-10582670)
chr2 (223-331)||(10582330-10582438)
chr2 (114-203)||(10582425-10582518)
chr2 (247-318)||(10931748-10931819)
chr2 (275-318)||(12043081-12043124)
[»] chr5 (6 HSPs)
chr5 (276-328)||(32117590-32117642)
chr5 (276-328)||(32117404-32117456)
chr5 (266-316)||(18900572-18900621)
chr5 (266-328)||(39646254-39646316)
chr5 (279-328)||(12460292-12460341)
chr5 (277-318)||(8082215-8082255)
[»] chr4 (3 HSPs)
chr4 (271-316)||(43804424-43804469)
chr4 (280-321)||(3469121-3469162)
chr4 (267-315)||(24187922-24187970)
[»] chr6 (7 HSPs)
chr6 (270-313)||(24762295-24762338)
chr6 (248-317)||(12229584-12229653)
chr6 (231-324)||(14161082-14161175)
chr6 (266-328)||(3113198-3113259)
chr6 (227-328)||(382168-382269)
chr6 (249-313)||(4433274-4433338)
chr6 (266-316)||(30863965-30864014)
[»] chr7 (3 HSPs)
chr7 (270-328)||(8688185-8688242)
chr7 (228-317)||(27763049-27763138)
chr7 (270-328)||(12270432-12270490)
[»] chr8 (5 HSPs)
chr8 (249-328)||(3724264-3724343)
chr8 (266-318)||(30198082-30198134)
chr8 (266-318)||(35578496-35578548)
chr8 (266-327)||(9573741-9573802)
chr8 (266-318)||(30919422-30919474)
[»] chr1 (2 HSPs)
chr1 (276-315)||(49520017-49520056)
chr1 (280-328)||(6421443-6421490)
[»] scaffold0018 (1 HSPs)
scaffold0018 (252-317)||(70332-70397)
[»] chr3 (1 HSPs)
chr3 (266-318)||(15800071-15800123)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 10582670 - 10582551
Alignment:
Q  1 tgataaaattgagcaaaatggctctgttgatcacaaggatctaactcaatacaatattgcaaagttaactaccattcgctatggttctaggccagacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10582670 tgataaaattgagcaaaatggctctgttgatcacaaggatctaactcaatacaatattgcaaagttaactaccattcgctatggttctaggccagacttt 10582571  T
Q  101 aaaggtatgttttcatgaaa 120  Q
    ||||||||||||||||||||    
T  10582570 aaaggtatgttttcatgaaa 10582551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 10582438 - 10582330
Alignment:
Q  223 gatacatgtgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10582438 gatacatgtgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcc 10582339  T
Q  323 tgattctct 331  Q
    |||||||||    
T  10582338 tgattctct 10582330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 10582518 - 10582425
Alignment:
Q  114 catgaaaggactattgtttagtcaagtttacatgtttataaata----ctttcagacagacatggttatctgtatcttaggatacatgtgagtc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| |||||||| ||||||||||||||    
T  10582518 catgaaaggactattgtttagtcaagtttacatgtttataaataaatactttcagacagacatggttatcagtatcttatgatacatgtgagtc 10582425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 10931819 - 10931748
Alignment:
Q  247 tcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    ||||| |||||||| ||  ||| ||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  10931819 tcgatgcaaaactaaatttaattgatatgaatctctagtgtgtgcctaatttgaacatgaatctcatcttga 10931748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 12043081 - 12043124
Alignment:
Q  275 gaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  12043081 gaatctctagtgtgtatctatattggacatgaatctcatattga 12043124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 32117590 - 32117642
Alignment:
Q  276 aatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  32117590 aatctctagtgtgtatctgttttgaacataaatctcatcttgagtcctgattc 32117642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 32117404 - 32117456
Alignment:
Q  276 aatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  32117404 aatctctggtgtgtatctgttttgaacataaatctcatcttgagtcctgattc 32117456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 18900572 - 18900621
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatctt 316  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  18900572 aatcgatatgaatctctagtgtgtatcta-tttcaacatgaatctcatctt 18900621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 39646254 - 39646316
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    |||| |||||||| | |||||||||||||| |||||||||||||||||||||| ||| |||||    
T  39646254 aatccatatgaatttttagtgtgtatctatattgaacatgaatctcatcttgaatccggattc 39646316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 12460341 - 12460292
Alignment:
Q  279 ctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  12460341 ctctattgtgtatctattttgaacatgaatttcatcttgaatcctgattc 12460292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 8082255 - 8082215
Alignment:
Q  277 atctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  8082255 atctctagtgtgtatcta-tttggacatgaatctcatcttga 8082215  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 43804424 - 43804469
Alignment:
Q  271 atatgaatctctagtgtgtatctattttgaacatgaatctcatctt 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  43804424 atatgaatctctagtttgtatctattttgaacatgaatctcatctt 43804469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 3469121 - 3469162
Alignment:
Q  280 tctagtgtgtatctattttgaacatgaatctcatcttgagtc 321  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  3469121 tctagtgtgtatcgcttttgaacatgaatctcattttgagtc 3469162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 24187922 - 24187970
Alignment:
Q  267 atcgatatgaatctctagtgtgtatctattttgaacatgaatctcatct 315  Q
    ||||||| ||||| |||||||||||||||| || ||||| |||||||||    
T  24187922 atcgatacgaatccctagtgtgtatctattatggacatggatctcatct 24187970  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 24762295 - 24762338
Alignment:
Q  270 gatatgaatctctagtgtgtatctattttgaacatgaatctcat 313  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  24762295 gatatgaatctctagtgtgtatctatttcgaacatgaatctcat 24762338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 12229653 - 12229584
Alignment:
Q  248 cgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttg 317  Q
    ||||||||||||| ||| ||| |||| ||| | ||| | |||||||||||||||||||||||||||||||    
T  12229653 cgatacaaaactaaatctaattgatacgaaccactaatatgtatctattttgaacatgaatctcatcttg 12229584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 14161082 - 14161175
Alignment:
Q  231 tgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctg 324  Q
    |||||| ||| |||| |||||||||||||  | | | |||||||||||| |||||||| |||||||||| | ||||||||| |||||| |||||    
T  14161082 tgagtcgtatcttgattcgatacaaaactgaacccactcgatatgaatccctagtgtgaatctattttggaaatgaatctcgtcttgaatcctg 14161175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 3113198 - 3113259
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| |||| ||||    
T  3113198 aatcgatatgaacctctagtgtgcatcta-tttggacatgaatctcatcttgaatcctaattc 3113259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 382168 - 382269
Alignment:
Q  227 catgtgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgat 326  Q
    |||||||| ||||| |||| ||||||| |||||  || ||||| |||  ||||||| |||||||| | ||| | |||||||||||||||||| || ||||    
T  382168 catgtgagacatatcttgattcgatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttgaatcttgat 382267  T
Q  327 tc 328  Q
    ||    
T  382268 tc 382269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 4433338 - 4433274
Alignment:
Q  249 gatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcat 313  Q
    |||| ||||||| ||  ||||||||||||| |||||||||| ||||||||| | |||||||||||    
T  4433338 gatataaaactaaattcaatcgatatgaatttctagtgtgtttctattttggatatgaatctcat 4433274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 30864014 - 30863965
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatctt 316  Q
    ||||||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  30864014 aatcgatacaaatctctagtgtgtatcta-tttggacatgaatctcatctt 30863965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 8688185 - 8688242
Alignment:
Q  270 gatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    |||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||    
T  8688185 gatatgaatctctattgtgtatctattt-gcacatgaatctcatcttgaatcctgattc 8688242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 27763049 - 27763138
Alignment:
Q  228 atgtgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttg 317  Q
    ||||||||| ||| |||| ||| ||||||| |  | | ||| |||| |||||||||| ||||||||||||||||||| |||||| |||||    
T  27763049 atgtgagtcctatcttgattcggtacaaaattgaacccaattgataagaatctctagcgtgtatctattttgaacattaatctcgtcttg 27763138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 12270490 - 12270432
Alignment:
Q  270 gatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    ||||||||||  ||||||||||| ||||||||| ||||| |||| |||| |||||||||    
T  12270490 gatatgaatccttagtgtgtatccattttgaacctgaatttcattttgaatcctgattc 12270432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 3724264 - 3724343
Alignment:
Q  249 gatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    |||||||||||| ||| |||||||| ||||||||  | ||||||||||||||||| |||||  |||||||| || |||||    
T  3724264 gatacaaaactaaatccaatcgatacgaatctcttctatgtatctattttgaacacgaatcatatcttgagacccgattc 3724343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 30198082 - 30198134
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    |||||| | ||||||||||||| |||||||||||||||| |||||||| ||||    
T  30198082 aatcgaaacgaatctctagtgtctatctattttgaacataaatctcatattga 30198134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 35578548 - 35578496
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    |||||||||||||||||||||| |||||| |||| || ||| |||||||||||    
T  35578548 aatcgatatgaatctctagtgtatatctactttggacgtgattctcatcttga 35578496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 9573802 - 9573741
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttgagtcctgatt 327  Q
    |||||||| |||||| |||  |||||||| |||| |||||||||||||||||| || |||||    
T  9573802 aatcgatacgaatctatagcatgtatctactttggacatgaatctcatcttgaatcatgatt 9573741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 30919474 - 30919422
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    |||| ||| |||||| ||||||| |||||| ||| ||||||||||||||||||    
T  30919474 aatcaatacgaatctttagtgtgcatctatattggacatgaatctcatcttga 30919422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 49520056 - 49520017
Alignment:
Q  276 aatctctagtgtgtatctattttgaacatgaatctcatct 315  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  49520056 aatctctagtgtgtatctattttggacatgaatctcatct 49520017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 6421443 - 6421490
Alignment:
Q  280 tctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattc 328  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||||||    
T  6421443 tctagtgtgtatcta-tttggacatgaacctcatcttgaatcctgattc 6421490  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 70397 - 70332
Alignment:
Q  252 acaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttg 317  Q
    ||||||||  |||| ||||| |||||| |||||||||| ||||| |||||||||||| ||||||||    
T  70397 acaaaactcaatcatatcgacatgaatatctagtgtgtgtctatcttgaacatgaatttcatcttg 70332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 15800071 - 15800123
Alignment:
Q  266 aatcgatatgaatctctagtgtgtatctattttgaacatgaatctcatcttga 318  Q
    |||||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||    
T  15800071 aatcgatacgaatccctaatgtgtatctattttggacatgaatctcatattga 15800123  T

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