View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_23 (Length: 324)
Name: NF3492_low_23
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 46404442 - 46404143
Alignment:
| Q |
14 |
ttcactgagacagctgtaaaattgttattattgtcaattttgactaataataatttacatcttcccccatattattctttaaaagttactagaggtaatt |
113 |
Q |
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| T |
46404442 |
ttcactgagacagctgtaaaattgttattattgtcaattttgactaataataatttacatcttcccccatattattctttaaaagttactagatgtaatt |
46404343 |
T |
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| Q |
114 |
agttgtgtatcttgtgtagcaaatgaaaaatcatatgattttttatgtactgcaaacgtttaacaatataatttcaaacgtgcttcaggagaaaatgagt |
213 |
Q |
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| T |
46404342 |
agttgtgtatcttgtgtagcaaatgaaaaatcatatgattttttatgtactgcaaatgtttaacaatataatttcaaacgtgcttcaggagaaaatgagt |
46404243 |
T |
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| Q |
214 |
cgccggtcgagtcgaacaatatatgtcggcaatcttcctggtgacattcgtttgagagaagtagaggatcttttctacaaagttcgtatgcgtatctctg |
313 |
Q |
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| T |
46404242 |
cgccggtcgagtcgaacaatatatgtcggcaatcttcctggtgacattcgtttgagagaagtagaggatcttttctacaaagttcgtatgcgtatctctg |
46404143 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 37123445 - 37123357
Alignment:
| Q |
205 |
aaaatgagtcgccggtcgagtcgaacaatatatgtcggcaatcttcctggtgacattcgtttgagagaagtagaggatcttttctacaa |
293 |
Q |
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| T |
37123445 |
aaaatgagtggccggtcaagtcgcacattatatgttggcaatcttcctggtgatattcgcctgagagaagttgaggatcttttctacaa |
37123357 |
T |
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