View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_low_25 (Length: 321)

Name: NF3492_low_25
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_low_25
NF3492_low_25
[»] chr1 (5 HSPs)
chr1 (152-260)||(37029851-37029959)
chr1 (18-111)||(37029997-37030090)
chr1 (18-96)||(32593662-32593740)
chr1 (18-96)||(31526658-31526736)
chr1 (18-96)||(51823539-51823617)
[»] chr3 (7 HSPs)
chr3 (18-89)||(49190552-49190623)
chr3 (18-92)||(49186846-49186920)
chr3 (18-96)||(49201822-49201900)
chr3 (18-96)||(49206777-49206855)
chr3 (18-94)||(49211365-49211441)
chr3 (193-252)||(49201686-49201745)
chr3 (152-225)||(49186710-49186779)
[»] chr4 (1 HSPs)
chr4 (18-96)||(52267390-52267468)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 37029959 - 37029851
Alignment:
Q  152 ctttttattatgtgatcgatacatgtctgatatacactaactcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacattttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029959 ctttttattatgtgatcgatacatgtctgatatacactaactcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacattttt 37029860  T
Q  252 agttgcttg 260  Q
    |||||||||    
T  37029859 agttgcttg 37029851  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 37030090 - 37029997
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaattgggtttagaggttta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37030090 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaattgggtttagaggttta 37029997  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 32593662 - 32593740
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||||||||  |||  | ||||||| |||||||||    
T  32593662 tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaatt 32593740  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 31526736 - 31526658
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    ||||||||||||||||||||||||| || ||||| || ||||||||||| |||  |||  | ||||||| |||||||||    
T  31526736 tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggataggaaccttatcagacaaaagctcttaatt 31526658  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 51823617 - 51823539
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    |||| |||||||||||||||||||| || ||||| || |||||||||||||||  |||  | ||||||| |||||||||    
T  51823617 tgttcaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaatt 51823539  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 49190623 - 49190552
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaact 89  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49190623 tgtttaagactgttcatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaact 49190552  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 49186920 - 49186846
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactctt 92  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||  |||| |||| |||||    
T  49186920 tgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggagccttatctgagaaaagctctt 49186846  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 49201900 - 49201822
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||  |||| |||| | |||||||    
T  49201900 tgtttaagactgtccatgagcaaacgggcatgttgcctcctgcttggatgggagccttatctgagaaaagcccttaatt 49201822  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 49206855 - 49206777
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    ||||||||||||||||||||||||| || ||||| || || ||||||||||||   || ||||||||||||||||||||    
T  49206855 tgtttaagactgtccatgagcaaacaggcatgtttcctccggcttggatgggatctttacctgacaaaaactcttaatt 49206777  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 49211441 - 49211365
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaa 94  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||||||||  |||  ||||||||| |||||||    
T  49211441 tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggatccttatctgacaaaagctcttaa 49211365  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 49201745 - 49201686
Alignment:
Q  193 tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacattttta 252  Q
    ||||||||||||||| |||| ||||| |||| | ||||||  ||||||||||||||||||    
T  49201745 tcttttattagttttaggttcaaactattatgttatatgacaatttaatttacattttta 49201686  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 49186779 - 49186710
Alignment:
Q  152 ctttttattatgtgatcgatacatgtctgatatacactaactcttttattagttttgggtttaaactcttatat 225  Q
    |||||||||| |||||| ||||||| ||||||  ||||| |||||||| | |||||||||||||||||||||||    
T  49186779 ctttttattacgtgatc-atacatgcctgata--cacta-ctcttttaattgttttgggtttaaactcttatat 49186710  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 52267390 - 52267468
Alignment:
Q  18 tgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtcttgcctgacaaaaactcttaatt 96  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||||||||  |||  | ||||||| |||||||||    
T  52267390 tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaatt 52267468  T

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