View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_29 (Length: 287)
Name: NF3492_low_29
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 16569247 - 16569484
Alignment:
| Q |
16 |
aagaaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacct |
115 |
Q |
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| T |
16569247 |
aagaaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaattta--cct |
16569344 |
T |
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| Q |
116 |
catgataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttct |
215 |
Q |
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| T |
16569345 |
catgataagcaatatcatgaagtgagaagacagaataagcaatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttct |
16569444 |
T |
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| Q |
216 |
ttctttactgcttccattttcgaaagcttctgcatcacct |
255 |
Q |
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| T |
16569445 |
ttctttactgcttccattttctaaagcttccgcatcacct |
16569484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 16527748 - 16527975
Alignment:
| Q |
16 |
aagaaagcaacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacct |
115 |
Q |
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| T |
16527748 |
aagaaagcaacatgagtagatgttttttacttctatatattaaaagatatgaacaattgaatgtaccatttttaatctcaatagttagaaattta--cct |
16527845 |
T |
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| Q |
116 |
catgataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttct |
215 |
Q |
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| T |
16527846 |
catgataagcaatatcatgaagtgagaagacacaataaactatgatagatgacattaaaggccaattcataaagaggttttcattctttcggactgtctt |
16527945 |
T |
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| Q |
216 |
ttctttactgcttccattttcgaaagcttc |
245 |
Q |
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| T |
16527946 |
ttctttgttgcttccattttctaaagcttc |
16527975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 16587954 - 16588183
Alignment:
| Q |
24 |
aacatgagtagatgtttttcacttctacaaattaaaagagatttacaattgaatgtaccatttttaatctcaatagttagaaatttatacctcatgataa |
123 |
Q |
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| T |
16587954 |
aacatgaatagatgtttttaacttatatgaattcaatgagatttacaattgcatgtaccatttttaatctaagtaattagaaattta--cctcttggtaa |
16588051 |
T |
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| Q |
124 |
gcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttctttac |
223 |
Q |
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| T |
16588052 |
gcaatatcgtgaagtgagacgacacaataagcaatgatagatgacattaaaggccaattcaaaaagaggttttcattcttttgaactgtcttttctttgc |
16588151 |
T |
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| Q |
224 |
tgcttccattttcgaaagcttctgcatcacct |
255 |
Q |
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| T |
16588152 |
tgcttccattttctaaagcttcggcattacct |
16588183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 16519407 - 16519502
Alignment:
| Q |
111 |
tacctcatgataagcaatatcatgaagtgagaagacagaataagctatgatagatgacattaaaggccaattcatgaagaggttttcattcttttg |
206 |
Q |
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| T |
16519407 |
tacctcttgataagcaatatcatgaagtgagaagacacagtaagcaatgatagatgacataaagggccaattcatcaagaggttttcattcttttg |
16519502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 9008970 - 9008905
Alignment:
| Q |
157 |
atgatagatgacattaaaggccaattcatgaagaggttttcattcttttggactgttctttcttta |
222 |
Q |
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| T |
9008970 |
atgatagatgacattaaaggccaattcctgaagagaatttcattcttttggactgtattttcttta |
9008905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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