View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_3 (Length: 647)
Name: NF3492_low_3
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 119 - 630
Target Start/End: Complemental strand, 24450223 - 24449709
Alignment:
| Q |
119 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24450223 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
24450124 |
T |
|
| Q |
219 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24450123 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatcta |
24450024 |
T |
|
| Q |
319 |
cagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24450023 |
cagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttact |
24449924 |
T |
|
| Q |
416 |
aaactcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctcattgatatacttaaaattg |
515 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24449923 |
aaactcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctcattgatatacttaaaattg |
24449824 |
T |
|
| Q |
516 |
gttttaaatatctcaaatctcttggcattttcctcctccgaattggcatagtctcgcccgtgctccttcttccacatttggaagagttcaaacacttctt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24449823 |
gttttaaatatctcaaatctcttggcattttcctcctccgaattggcatagtctcgcccgtgctccttcttccacatttggaagagttcaaacacttctt |
24449724 |
T |
|
| Q |
616 |
catcagaggaaaact |
630 |
Q |
| |
|
||||||||||||||| |
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|
| T |
24449723 |
catcagaggaaaact |
24449709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24450332 - 24450288
Alignment:
| Q |
10 |
aagaatatatatggattattagctaatcttgcataaataaacaca |
54 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
24450332 |
aagaaaatatatggattattagctaatctttcataaataaacaca |
24450288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 119 - 630
Target Start/End: Complemental strand, 35876022 - 35875509
Alignment:
| Q |
119 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35876022 |
catcataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaa |
35875923 |
T |
|
| Q |
219 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35875922 |
aaatgaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatcta |
35875823 |
T |
|
| Q |
319 |
cagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35875822 |
cagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttact |
35875723 |
T |
|
| Q |
416 |
aaactcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctcattgatatacttaaaattg |
515 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35875722 |
aaactcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcatctcattgatatactt-aaattg |
35875624 |
T |
|
| Q |
516 |
gttttaaatatctcaaatctcttggcattttcctcctccgaattggcatagtctcgcccgtgctccttcttccacatttggaagagttcaaacacttctt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35875623 |
gttttaaatatctcaaatctcttggcattttcctcctccgaattggcatagtctcgcccgtgctccttcttccacatttggaagagttcaaacacttctt |
35875524 |
T |
|
| Q |
616 |
catcagaggaaaact |
630 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35875523 |
catcagaggaaaact |
35875509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 35876131 - 35876087
Alignment:
| Q |
10 |
aagaatatatatggattattagctaatcttgcataaataaacaca |
54 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35876131 |
aagaaaatatatggattattagctaatctttcataaataaacaca |
35876087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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