View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_31 (Length: 270)
Name: NF3492_low_31
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 22633956 - 22633708
Alignment:
| Q |
1 |
acagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatgcttctacaaccaatca |
100 |
Q |
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| T |
22633956 |
acagtcggttgtctaaactcgctgtataaaagtgtggcagatctggatgaaggttgtgtctctaacgagacaatcaaacaaatgcttctacaaccaatca |
22633857 |
T |
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| Q |
101 |
actcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccgcctacttgattggctgcttata |
200 |
Q |
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| T |
22633856 |
actcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccacctactctattggctgcttata |
22633757 |
T |
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| Q |
201 |
tcgtaatattaccaactcaacctataaagataaacataaatgtcactgt |
249 |
Q |
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| T |
22633756 |
tcgtaatattaccaactcaacgtataaagataaacataaatgtcactgt |
22633708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 22625178 - 22625351
Alignment:
| Q |
1 |
acagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatgcttctacaaccaatca |
100 |
Q |
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||||| |||||||||||||| || ||| |||||| ||| |||||||||||||||||||||| | | |||| |||||||||| | || || ||||| | |
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| T |
22625178 |
acagttggttgtctaaactctctctatggaagtgttgcaaatctggatgaaggttgtttctcaactaagacaaccaaacaaatgttgctgcagccaataa |
22625277 |
T |
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| Q |
101 |
actcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
174 |
Q |
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| T |
22625278 |
actcagctgaagattattgcaacactcttaaactcaacattgatgacactcaaccaacaaagtacttcgcatgt |
22625351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 22622971 - 22623064
Alignment:
| Q |
70 |
acaatcaaacaaatgcttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagt |
163 |
Q |
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|||| |||||||||| | || ||||| || |||| || ||||||||||| |||||||||||| | ||||| || ||||||||||||||||||| |
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| T |
22622971 |
acaaccaaacaaatgttgctgcaacctattaacttcgcagaagattattgcaacactcttaaacttaacatcgatgacactcaaccaacaaagt |
22623064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 23336035 - 23335955
Alignment:
| Q |
94 |
ccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
174 |
Q |
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|||| ||||| ||| |||| |||||||| ||||||||| | |||||||||||| | | |||||||||||||||| |||| |
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| T |
23336035 |
ccaaccaacttagcagaaggttattgtagaactcttaaacttaacattgacgactcaaatccaacaaagtacttcatatgt |
23335955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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