View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_35 (Length: 257)
Name: NF3492_low_35
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 3707926 - 3708153
Alignment:
| Q |
11 |
cacagaccaaagtcctgagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
110 |
Q |
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|||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3707926 |
cacaaaccaaaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
3708025 |
T |
|
| Q |
111 |
aacttggccattgtttggtgatcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3708026 |
aacttggccattgtttggtgatcaaataatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggcattgca |
3708125 |
T |
|
| Q |
211 |
gaaagagaggaaattgctaaggtggtta |
238 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3708126 |
gaaagagaggaaattgctaaggtggtta |
3708153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 3719435 - 3719663
Alignment:
| Q |
11 |
cacagaccaaagtcctgagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
110 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3719435 |
cacaaaccaaagtcctgagtcacacttcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
3719534 |
T |
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| Q |
111 |
aacttggccattgtttggtgatcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgca |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3719535 |
aacttggccattgtttggtgatcaaagaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatggaattgca |
3719634 |
T |
|
| Q |
211 |
gaaagagaggaaattgctaaggtggttaa |
239 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3719635 |
gaaagagaggaaattgctaaggtggttaa |
3719663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 3770269 - 3770041
Alignment:
| Q |
11 |
cacagaccaaagtcctgagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
110 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| | |
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| T |
3770269 |
cacaaaccaaaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcaacacttgagagtattgtgtcgggagtgccaatggt |
3770170 |
T |
|
| Q |
111 |
aacttggccattgtttggtgatcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgca |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3770169 |
aacttggccattgtttggtgatcaaagaatgaatgctattttaatagtagagggacttaaagtgggtttgaagataaaatttaatgagaatgacattgca |
3770070 |
T |
|
| Q |
211 |
gaaagagaggaaattgctaaggtggttaa |
239 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3770069 |
gaaagagaggaaattgctaaggtggttaa |
3770041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 3701159 - 3701387
Alignment:
| Q |
11 |
cacagaccaaagtcctgagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgat |
110 |
Q |
| |
|
|||| |||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |
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| T |
3701159 |
cacaaaccaaaatccttagtcacacttcaaccggtggatttttaacacattgtggttggaattcgacacttgagagtatcgtgttaggagtgccaatgat |
3701258 |
T |
|
| Q |
111 |
aacttggccattgtttggtgatcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgca |
210 |
Q |
| |
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||| |||||||| ||||| || |||| |||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3701259 |
aacatggccattatttggcgagcaaagaatgaatgctgttttgttgacagagggactcaaagtgggtttgaagatcaaatttaatgagaatggcattgca |
3701358 |
T |
|
| Q |
211 |
gaaagagaggaaattgctaaggtggttaa |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
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| T |
3701359 |
gaaagagtggaaattgctaaggtggttaa |
3701387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 33005161 - 33004958
Alignment:
| Q |
31 |
cacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtg |
130 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||| || || ||||| |||| ||| ||||||||||||||||||||||| |||||||| | |
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| T |
33005161 |
cacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagagcattgcgtcgggagtgccaatgataacttggccgttgtttggcg |
33005062 |
T |
|
| Q |
131 |
atcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgcagaaaga-gaggaaattgcta |
229 |
Q |
| |
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| |||| | ||||||||||||| ||| ||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||| |
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| T |
33005061 |
agcaaagattgaatgctattttgttaatagagggactcaaggtgggtttgaaggtaaaa-ttaatgagagtggcattgcagaaagaggaggaaattgcta |
33004963 |
T |
|
| Q |
230 |
aggtg |
234 |
Q |
| |
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||||| |
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| T |
33004962 |
aggtg |
33004958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 3777916 - 3777716
Alignment:
| Q |
31 |
cacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagtattgtgtccggagtgccaatgataacttggccattgtttggtg |
130 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||||| | |
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| T |
3777916 |
cacatttcaaccggtggatttttaacacattgtggttggaattcgacactggagagtcttgtgttcggagtgccaatgataacttggccattgttttcag |
3777817 |
T |
|
| Q |
131 |
atcaaataatgaatgctattttattagtagagggactcaaagtgggtttgaagataaaatttaatgagaatggcattgcagaaagagaggaaattgctaa |
230 |
Q |
| |
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| |||| |||||||||||| || | ||||||||||| ||| ||||||||| ||| ||||||||||| |||||| || |||||||| ||||||||||| |
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| T |
3777816 |
agcaaagaatgaatgctatgttgt---tagagggactcggagttggtttgaaggtaagatttaatgagattggcatagctgaaagagatgaaattgctaa |
3777720 |
T |
|
| Q |
231 |
ggtg |
234 |
Q |
| |
|
|||| |
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|
| T |
3777719 |
ggtg |
3777716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 11292400 - 11292341
Alignment:
| Q |
25 |
ctgagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgag |
84 |
Q |
| |
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|||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||||| |
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| T |
11292400 |
ctgagtcacacatcaacaggtggattcttatcacattgtggttggaattcaacgattgag |
11292341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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