View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3492_low_36 (Length: 256)

Name: NF3492_low_36
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3492_low_36
NF3492_low_36
[»] chr1 (6 HSPs)
chr1 (19-200)||(32797066-32797247)
chr1 (197-252)||(15522880-15522935)
chr1 (197-252)||(21467032-21467087)
chr1 (197-237)||(19102062-19102102)
chr1 (197-252)||(15530874-15530929)
chr1 (197-252)||(22540032-22540087)
[»] chr8 (2 HSPs)
chr8 (197-253)||(45246014-45246070)
chr8 (197-252)||(23684795-23684850)
[»] chr3 (4 HSPs)
chr3 (197-253)||(14233531-14233587)
chr3 (197-253)||(39184858-39184914)
chr3 (197-252)||(20790962-20791017)
chr3 (200-253)||(50244336-50244391)
[»] chr5 (3 HSPs)
chr5 (197-237)||(27592964-27593004)
chr5 (197-237)||(30326334-30326374)
chr5 (200-253)||(9025697-9025752)
[»] chr6 (1 HSPs)
chr6 (197-252)||(21986953-21987008)
[»] scaffold0284 (2 HSPs)
scaffold0284 (200-253)||(224-279)
scaffold0284 (200-253)||(9039-9094)
[»] scaffold0211 (1 HSPs)
scaffold0211 (200-253)||(16437-16492)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 32797247 - 32797066
Alignment:
Q  19 atttagttacacgtcgtggaaaatatgcaaattcagaatatgaaatttcttgatacttcaatttcttgtcccaaggtcaaatcctcaatttatgacacac 118  Q
    |||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32797247 atttagttacacgttgtggaaaatatgcaaatacagaaattgaaatttcttgatacttcaatttcttgtcccaaggtcaaatcctcaatttatgacacac 32797148  T
Q  119 cttctcaataatgcgcttaaatattgtgcaaaattaaacaccatcgcttgacaaaagtatcctccatcgtcaggcgatctca 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32797147 cttctcaataatgcacttaaatattgtgcaaaattaaacaccatcggttgacaaaagtgtcctccatcgtcaggcgatctca 32797066  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 15522935 - 15522880
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  15522935 ctcactcatatatgacaaattaacttctctcttaaatgtgagactctctacatctg 15522880  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 21467032 - 21467087
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  21467032 ctcactcatatatgacaaattaacttctctcttaaatgtgagactctctacatctg 21467087  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 19102062 - 19102102
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtga 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19102062 ctcactcatatatgacaaattaacttctctcttaaatgtga 19102102  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 15530929 - 15530874
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    |||||||||||||||||| |||||||||||||||||||||| |||  |||||||||    
T  15530929 ctcactcatatatgacaatttaacttctctcttaaatgtgagactctctacatctg 15530874  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 22540087 - 22540032
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    |||||||||||||||||| |||||||||||||||||||||| |||  |||||||||    
T  22540087 ctcactcatatatgacaatttaacttctctcttaaatgtgagactctctacatctg 22540032  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 45246070 - 45246014
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctgt 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  45246070 ctcactcatatatgacaaattaacttctctcttaaatgtgagactccctacatctgt 45246014  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 23684850 - 23684795
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    |||||||||||||||||||||||||||||||||| |||||| |||  |||||||||    
T  23684850 ctcactcatatatgacaaattaacttctctcttatatgtgagactctctacatctg 23684795  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 14233587 - 14233531
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctgt 253  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  14233587 ctcactcatatatgacaaattaacttctctcttaaatgtgagactctctacatctgt 14233531  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 39184914 - 39184858
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctgt 253  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  39184914 ctcactcatatatgacaaattaacttctctcttaaatgtgagactctctacatctgt 39184858  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 20791017 - 20790962
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||  |||||||||    
T  20791017 ctcactcatatatgacaaattaacttatctcttaaatatgagactctctacatctg 20790962  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 50244391 - 50244336
Alignment:
Q  200 actcatatatgacaaattaacttctctct--taaatgtgaaacttcctacatctgt 253  Q
    ||||| ||| |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  50244391 actcacatacgacaaattaacttctctctcctaaatgtgagactttctacatctgt 50244336  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 27592964 - 27593004
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtga 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27592964 ctcactcatatatgacaaattaacttctctcttaaatgtga 27593004  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 30326334 - 30326374
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtga 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30326334 ctcactcatatatgacaaattaacttctctcttaaatgtga 30326374  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 9025752 - 9025697
Alignment:
Q  200 actcatatatgacaaattaacttctctct--taaatgtgaaacttcctacatctgt 253  Q
    ||||| ||| |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  9025752 actcacatacgacaaattaacttctctctcctaaatgtgagactttctacatctgt 9025697  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 21987008 - 21986953
Alignment:
Q  197 ctcactcatatatgacaaattaacttctctcttaaatgtgaaacttcctacatctg 252  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||    
T  21987008 ctcactcatatatgacaaaataacttctctcttaaatgtgagactctctacatctg 21986953  T

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Target: scaffold0284 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 224 - 279
Alignment:
Q  200 actcatatatgacaaattaacttctctct--taaatgtgaaacttcctacatctgt 253  Q
    ||||| ||| |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  224 actcacatacgacaaattaacttctctctcctaaatgtgagactttctacatctgt 279  T

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Target: scaffold0284; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 9039 - 9094
Alignment:
Q  200 actcatatatgacaaattaacttctctct--taaatgtgaaacttcctacatctgt 253  Q
    ||||| ||| |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  9039 actcacatacgacaaattaacttctctctcctaaatgtgagactttctacatctgt 9094  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 16437 - 16492
Alignment:
Q  200 actcatatatgacaaattaacttctctct--taaatgtgaaacttcctacatctgt 253  Q
    ||||| ||| |||||||||||||||||||  ||||||||| |||| ||||||||||    
T  16437 actcacatacgacaaattaacttctctctcctaaatgtgagactttctacatctgt 16492  T

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