View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_40 (Length: 248)
Name: NF3492_low_40
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9511345 - 9511566
Alignment:
| Q |
1 |
taagaaataaatattttacaagttgtaacattcccattttttccctgnnnnnnntattccgattttaaattggacgggtgtatttattttctttttaaaa |
100 |
Q |
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| T |
9511345 |
taagaaataaatattttacaagttgtaacattccgatttttttcctaaaaaaaatattccgattttaaattgaacgggtgtatttattttctttttaaaa |
9511444 |
T |
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| Q |
101 |
caacttagaactttgtattaaaggattcatgatcttttttaatttaaaattagaaaaaataattatttcgaaagtgtttttcaaaataagggcatgaatc |
200 |
Q |
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| T |
9511445 |
caacttagaactttgtattaaaggattcatgatcttttttaatttaaaattagaaaaaataattatttcgaaagtgtttttcaaaataaggacatgattc |
9511544 |
T |
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| Q |
201 |
aataaacatattttataaagta |
222 |
Q |
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| T |
9511545 |
aataaacatattttataaagta |
9511566 |
T |
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Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34481526 - 34481587
Alignment:
| Q |
123 |
ggattcatgatcttttttaatttaaaattaga--aaaaataa--ttatttcgaaagtgtttt |
180 |
Q |
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| T |
34481526 |
ggattcatgatcgtttttaatataaaattagagtaaaaataattttatttcgaaagtgtttt |
34481587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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