View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_44 (Length: 228)
Name: NF3492_low_44
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 9511317 - 9511105
Alignment:
| Q |
1 |
ctctttcatgactgttatctttcaagttttgtatcatatcaccatcaattattagaccaactttcaacttgtgttttggctggttcacttggtaaattaa |
100 |
Q |
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| T |
9511317 |
ctctttcatgactgttatctttcaagttttgtatcatatcaccatcaattattagaccaactttcat-ttgtgttttggctggttcacttggtaaattaa |
9511219 |
T |
|
| Q |
101 |
ttagtctaacagaatcttcttcatactatgtattgaaattaattattaggttccgtcatttatttgacttaacgtctaataaactgtgtacagtagctga |
200 |
Q |
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| T |
9511218 |
ttagtctaacagaatcttcttcatactatgtattgaaattaattactaggttccgtcgtttatttgatttaatgtctaataaactgtgtacagtagctga |
9511119 |
T |
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| Q |
201 |
tatgtttgatcctg |
214 |
Q |
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| T |
9511118 |
tatgtttgatcctg |
9511105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 5808964 - 5808904
Alignment:
| Q |
154 |
cgtcatttatttgacttaacgtctaataaactgtgtacagtagctgatatgtttgatcctg |
214 |
Q |
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| T |
5808964 |
cgtcgtttattggacttaacgtctaataaactgtgtacgatagctaatatgtttgatcctg |
5808904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 11196740 - 11196684
Alignment:
| Q |
148 |
aggttccgtcatttatttgacttaacgtctaataaactgtgtacagtagctgatatg |
204 |
Q |
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| T |
11196740 |
aggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatg |
11196684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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