View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_46 (Length: 224)
Name: NF3492_low_46
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_46 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37844630 - 37844853
Alignment:
| Q |
1 |
tgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctc |
100 |
Q |
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| T |
37844630 |
tgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctc |
37844729 |
T |
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| Q |
101 |
acgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgccaataaaatcaatgcccttcaggacctagtt |
200 |
Q |
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| T |
37844730 |
acgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgccaataaaatcaatgcccttcaggacctagtt |
37844829 |
T |
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| Q |
201 |
ttggaggctacagagaacctaaat |
224 |
Q |
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| T |
37844830 |
ttggaggctacagagaacctaaat |
37844853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 35025487 - 35025610
Alignment:
| Q |
16 |
taacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgttggggccaata |
115 |
Q |
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| T |
35025487 |
taacctatgcttggcctagtttgatcttccttccctctatcactggtccaatacttaccaaacctttcaactggtttttcctaacacgttggggtcaata |
35025586 |
T |
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| Q |
116 |
tatgcaccttcaacaatccttgta |
139 |
Q |
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| T |
35025587 |
taggtacctgcagaaatccttgta |
35025610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 37851838 - 37851957
Alignment:
| Q |
5 |
tgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgt |
104 |
Q |
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| T |
37851838 |
tgttccaaaaataacctatgcttggtctagtttgatcttccgtccctctatcactggtccaatacttaccaaacctttcaactggtttttcctatcacat |
37851937 |
T |
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| Q |
105 |
tggggccaatatatgcacct |
124 |
Q |
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| T |
37851938 |
tggggtcaatataggcacct |
37851957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 37838511 - 37838645
Alignment:
| Q |
7 |
ttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgttg |
106 |
Q |
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| T |
37838511 |
ttccaaaaataacctatgcttggccaattttgatcttccgtccctctatcaccggtccaatacttaccaaacctttcaattggtttttcctatcacgttg |
37838610 |
T |
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| Q |
107 |
gggccaatatatgcaccttcaacaatccttgtatt |
141 |
Q |
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| T |
37838611 |
gggtcaatatagacacctgcagaaatccttgtatt |
37838645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 37846220 - 37846364
Alignment:
| Q |
29 |
gccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgttggggccaatatatgcaccttcaa |
128 |
Q |
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| T |
37846220 |
gccttgtttgatttaccttccctctatcactgggccaacacttacacaacttttcaattggtttttcctctcacagtggggtcaatatatgtaccaaaag |
37846319 |
T |
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| Q |
129 |
caatccttgtattatcaacccaaatcatacttcttaaatgccaat |
173 |
Q |
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| T |
37846320 |
aaatccttgtattatcaacctaaatcatactttatacatgccaat |
37846364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 37833040 - 37833098
Alignment:
| Q |
59 |
tggtccagtagttaccaaacctttcaattggttttttctctcacgttggggccaatata |
117 |
Q |
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| T |
37833040 |
tggtccaatacttaccaaacctttcaactggtttttcctatcgcgttggggtcaatata |
37833098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 37837332 - 37837361
Alignment:
| Q |
195 |
ctagttttggaggctacagagaacctaaat |
224 |
Q |
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| T |
37837332 |
ctagttttggaggctacagagaacctaaat |
37837361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 36867190 - 36867324
Alignment:
| Q |
5 |
tgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgt |
104 |
Q |
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| T |
36867190 |
tgttccaaaaataaactatgtttggcctagtttgatcttccttccctctatcactagtttaatacttatcaaacctttcaactggtttttcctatcacgt |
36867289 |
T |
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| Q |
105 |
tggggccaatatatgcaccttcaacaatccttgta |
139 |
Q |
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| T |
36867290 |
tggggtcaatataggtacctgcagaaatccttgta |
36867324 |
T |
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