View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_47 (Length: 211)
Name: NF3492_low_47
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 36871419 - 36871230
Alignment:
| Q |
8 |
ccaagaatattcgacactaatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctg |
107 |
Q |
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| T |
36871419 |
ccaaaaatattcgacactaatatgaaaaatcatcttgggatacggttactatttttagcatttatatctctcaagtgcaaaaaacaggacactttatctg |
36871320 |
T |
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| Q |
108 |
acactattttgtacaaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgt |
197 |
Q |
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| T |
36871319 |
acactattttgtacaaacaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgt |
36871230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 37629765 - 37629838
Alignment:
| Q |
124 |
acaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgt |
197 |
Q |
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| T |
37629765 |
acaggtaataacaaatggcaagtacaaaagtgtggaacaccgtgtggtagcacaaactgatggaacaagaatgt |
37629838 |
T |
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