View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_7 (Length: 525)
Name: NF3492_low_7
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 37111927 - 37111413
Alignment:
| Q |
1 |
aggcaacgccgcagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccct |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111927 |
aggcaacgccgcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccct |
37111828 |
T |
|
| Q |
101 |
gactatggccatcttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111827 |
gactatggccatcttgaccctattgctattgcagctctagtagccatcacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatag |
37111728 |
T |
|
| Q |
201 |
ccacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttca |
300 |
Q |
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| T |
37111727 |
ccacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttca |
37111628 |
T |
|
| Q |
301 |
cggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacatt |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111627 |
cggtatggtcaatgcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacatt |
37111528 |
T |
|
| Q |
401 |
ccaattggtctagttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttg |
500 |
Q |
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| T |
37111527 |
ccaattggtctagttggttcaatgacgattacaacaataatttattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttg |
37111428 |
T |
|
| Q |
501 |
atgctcctttctctg |
515 |
Q |
| |
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||||||||||||||| |
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| T |
37111427 |
atgctcctttctctg |
37111413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 513
Target Start/End: Complemental strand, 37120181 - 37119670
Alignment:
| Q |
2 |
ggcaacgccgcagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctg |
101 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37120181 |
ggcaacgcggcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctg |
37120082 |
T |
|
| Q |
102 |
actatggccatcttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagc |
201 |
Q |
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| |||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37120081 |
attatggccatcttgaccctattgctattggagccctagtagccatcacagctcttgcagtttacagcaccaaaggttcttccatcttcaactacatagc |
37119982 |
T |
|
| Q |
202 |
cacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcac |
301 |
Q |
| |
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|||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
37119981 |
cacaatgttccacatggctgtcattatcttcatagtaatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggttgcat |
37119882 |
T |
|
| Q |
302 |
ggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattc |
401 |
Q |
| |
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|| ||||||| | |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
37119881 |
ggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgctgtttcaaccatggctgaagaaactaaaaaccctggtagagacattc |
37119782 |
T |
|
| Q |
402 |
caattggtctagttggttcaatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaagaactaaatgttga |
501 |
Q |
| |
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| || ||||||||||| |||||||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
37119781 |
ctatcggtctagttggatcaatgacgattacaacagcaatatattgcttactaggagcaacactttgtcttatgcagaattacaaagaacttgatactga |
37119682 |
T |
|
| Q |
502 |
tgctcctttctc |
513 |
Q |
| |
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|||||||||||| |
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| T |
37119681 |
tgctcctttctc |
37119670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 37136084 - 37136197
Alignment:
| Q |
14 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||| |||| |
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| T |
37136084 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatc |
37136183 |
T |
|
| Q |
114 |
ttgaccctattgct |
127 |
Q |
| |
|
|||||||||||||| |
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|
| T |
37136184 |
ttgaccctattgct |
37136197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 320 - 487
Target Start/End: Original strand, 37136390 - 37136557
Alignment:
| Q |
320 |
gctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggtt |
419 |
Q |
| |
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||||| |||||||||||||| | ||||||||||| || ||||| ||||| || ||||| || |||||||| ||||||||||| |||||||| || || | |
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| T |
37136390 |
gctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtaggat |
37136489 |
T |
|
| Q |
420 |
caatgacgattacaacaataatctattgcttactggcagcaacactgtgtcttatgcagaattacaaa |
487 |
Q |
| |
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||||| |||| || | || ||||||| ||| ||| ||||||| || ||||||||||| |||||| |
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|
| T |
37136490 |
caatggtaattatcactttcatatattgctcactagcaacaacactatgccttatgcagaactacaaa |
37136557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
335 |
gcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaa |
434 |
Q |
| |
|
||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||| | ||| || || ||||||||| | || |||||||| |||||| |
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| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
|
| Q |
435 |
ca |
436 |
Q |
| |
|
|| |
|
|
| T |
10681012 |
ca |
10681013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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