View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3492_low_9 (Length: 498)
Name: NF3492_low_9
Description: NF3492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3492_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Original strand, 37844182 - 37844653
Alignment:
| Q |
17 |
acagagaaggatttacgaaagagaccaatcatgaaagatgttattggtttgtttaaaatgcacttgtttaagcggtgtgacgaggaagaatatggtgatg |
116 |
Q |
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| T |
37844182 |
acagagaaggatttacgaaagagaccaatcatgaaagatgttattggtttgtttaaaatgcacttgtttaagcggtgtgacgaggaagaatatggtgatg |
37844281 |
T |
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| Q |
117 |
cggttgcagctaatatgctccctaacattccatttgtcagcattgaccacaatctacatggagaaagcagtagggcagctgcccaaagacaaagagaagt |
216 |
Q |
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| T |
37844282 |
cggttgcagctaatatgctccctaacattccatttgtcagcattgaccacaatctacatggagaaagcagtagggcagctgcccaaagacaaagagaagt |
37844381 |
T |
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| Q |
217 |
tacatttaatatggagacggatcctatggattattatagtgactttggcttttggcaggacactgaacatgaacctatggattattatagtgactctagc |
316 |
Q |
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| T |
37844382 |
tatatttaatatggagacggatcctatggattattatagtgactttggcttttggcaggacactgaacatgaacctatggattattatagtgactctagc |
37844481 |
T |
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| Q |
317 |
ttttggcatgacgttgatcaatttctatctggattcggtgttgaagatgattggaatctcaaaccaacaatttgtattgatggacttttagttaaactga |
416 |
Q |
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| T |
37844482 |
ttttggcatgacattgatcaatttctatctggattcggtgttgaagatgattggaatctcaaaccaacaatttgtattgatgggcttttagttaaactga |
37844581 |
T |
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| Q |
417 |
tgggaaatggtaagataatagctgaaaagcttgtgaaggtagctgctctgaatgttccaaaagtaacctatg |
488 |
Q |
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| T |
37844582 |
tgggaaatggtaagataatagctgaaaagcttgtgaaggtagctgctctgaatgttccaaaagtaacctatg |
37844653 |
T |
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