View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_15 (Length: 323)
Name: NF3493_high_15
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_15 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 4021866 - 4021555
Alignment:
| Q |
1 |
ccatagatctctccaaaacaatgtgttttcacttttcaccatttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctt |
100 |
Q |
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| T |
4021866 |
ccatagatctctccaaaacaatgtgttttcacttttcaccgtttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctt |
4021767 |
T |
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| Q |
101 |
tccaatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatac |
200 |
Q |
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| T |
4021766 |
tccaatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatac |
4021667 |
T |
|
| Q |
201 |
tttattaacccgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaacgttaaatgaaataagtacaagttttttacttcga |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4021666 |
tttattaacctgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaactttaaatgaaataagtacaagttttttacttcga |
4021567 |
T |
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| Q |
301 |
gtcctccttctt |
312 |
Q |
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|||||||||||| |
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| T |
4021566 |
gtcctccttctt |
4021555 |
T |
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Back To:
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Target: scaffold0376 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
71 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
148 |
Q |
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||||||||||||||| |||||||| ||||||| || |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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