View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3493_high_18 (Length: 283)
Name: NF3493_high_18
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 21602579 - 21602486
Alignment:
| Q |
175 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatactg |
268 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
21602579 |
cgacgtgcacttcgaaaataattatttgatttagaaagtgagagatataagatttttatctaaatgatctattttaaatcatgtctagatactg |
21602486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 1819203 - 1819295
Alignment:
| Q |
175 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatact |
267 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||| || ||| | || ||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
1819203 |
cgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaacatcatatgtttatctaagggatatgttttaagccatgtgtagatact |
1819295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University