View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3493_high_2 (Length: 577)

Name: NF3493_high_2
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3493_high_2
NF3493_high_2
[»] chr8 (5 HSPs)
chr8 (415-521)||(26545861-26545965)
chr8 (518-558)||(41602586-41602626)
chr8 (518-554)||(7011232-7011268)
chr8 (518-562)||(18093013-18093057)
chr8 (518-562)||(18093245-18093289)
[»] chr4 (2 HSPs)
chr4 (417-530)||(9942328-9942442)
chr4 (435-545)||(9946822-9946934)
[»] chr5 (4 HSPs)
chr5 (474-526)||(4937004-4937056)
chr5 (506-553)||(11168128-11168175)
chr5 (525-562)||(36400803-36400840)
chr5 (509-553)||(26364700-26364744)
[»] chr3 (2 HSPs)
chr3 (509-553)||(2181410-2181454)
chr3 (518-554)||(35495062-35495098)
[»] chr6 (2 HSPs)
chr6 (515-553)||(11985003-11985041)
chr6 (515-561)||(11985200-11985246)
[»] chr2 (1 HSPs)
chr2 (508-562)||(16238206-16238260)
[»] chr1 (3 HSPs)
chr1 (515-561)||(39694157-39694203)
chr1 (453-481)||(84268-84296)
chr1 (509-553)||(11932781-11932825)
[»] chr7 (2 HSPs)
chr7 (486-563)||(48106252-48106329)
chr7 (518-562)||(31530078-31530122)
[»] scaffold0001 (1 HSPs)
scaffold0001 (518-562)||(405169-405213)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 521
Target Start/End: Complemental strand, 26545965 - 26545861
Alignment:
Q  415 ggcttaattatagtattggtcccctaagtatccaaatattgcaattttggctctctaacaaaataaatacttttgagccctctatatttaccccctttta 514  Q
    ||||||||||  || |||| ||||||||||||||||| |||| ||||||| ||| ||| ||||||| |||||| ||| ||||||| |||||||||||||     
T  26545965 ggcttaattactgttttggccccctaagtatccaaatgttgcgattttgg-tct-taaaaaaataactactttcgagtcctctatgtttacccccttttg 26545868  T
Q  515 caatttt 521  Q
    |||||||    
T  26545867 caatttt 26545861  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 558
Target Start/End: Original strand, 41602586 - 41602626
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgtacac 558  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  41602586 ttttggccccctaagccaattttgactcggtcaacgcacac 41602626  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 7011268 - 7011232
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgt 554  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7011268 ttttggccccctaggccaattttgactcggtcaacgt 7011232  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 18093013 - 18093057
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||    
T  18093013 ttttggccccctaagtcaattttgactcggtcaacgcacatgtgg 18093057  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 18093289 - 18093245
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    ||||||||||||| | |||||||||||| ||||||| ||||||||    
T  18093289 ttttggccccctaggtcaattttgactcggtcaacgcacacgtgg 18093245  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 530
Target Start/End: Original strand, 9942328 - 9942442
Alignment:
Q  417 cttaattatagtattggtcccctaagtatccaaatattgcaattttggctctctaaca-aaataaatacttttgagccctctatatttacccccttttac 515  Q
    ||||||||  || |||| ||||||||||||||||| |||  |||||||| | |||| | |||||| |||||| ||||| ||||| ||||||| ||||| |    
T  9942328 cttaattactgttttggccccctaagtatccaaatgttgtgattttggccccctaaaagaaataactactttcgagccttctatgtttaccctcttttgc 9942427  T
Q  516 aattttggcccccta 530  Q
    |||||| ||||||||    
T  9942428 aattttagcccccta 9942442  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 545
Target Start/End: Complemental strand, 9946934 - 9946822
Alignment:
Q  435 cccctaagtatccaaatattgcaattttggctctctaacaa--aataaatacttttgagccctctatatttacccccttttacaattttggccccctaag 532  Q
    |||||||||||  |||| |||||||||| |  | |||| ||  ||||| |||||||||||||||||| |||| ||| |||| ||||||| ||||| ||      
T  9946934 cccctaagtatttaaatgttgcaatttttgtaccctaaaaaataataactacttttgagccctctatgtttatccctttttgcaattttagccccatagc 9946835  T
Q  533 ccaattttgactc 545  Q
     ||||||||||||    
T  9946834 tcaattttgactc 9946822  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 4937004 - 4937056
Alignment:
Q  474 aaaataaatacttttgagccctctatatttacccccttttacaattttggccc 526  Q
    ||||||| |||||||||||||||||| ||||||| |||||||| |||||||||    
T  4937004 aaaataactacttttgagccctctatgtttaccctcttttacagttttggccc 4937056  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 553
Target Start/End: Complemental strand, 11168175 - 11168128
Alignment:
Q  506 ccccttttacaattttggccccctaagccaattttgactcagtcaacg 553  Q
    |||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  11168175 ccccttttgcaattttggccccccaagccaattttgaccaagtcaacg 11168128  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 36400840 - 36400803
Alignment:
Q  525 cccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  36400840 cccctaggccaattttgactcagtcaacgcacacgtgg 36400803  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 26364700 - 26364744
Alignment:
Q  509 cttttacaattttggccccctaagccaattttgactcagtcaacg 553  Q
    |||| ||| |||||||||||||| ||||||||||||| |||||||    
T  26364700 ctttgacagttttggccccctaaaccaattttgactcggtcaacg 26364744  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 2181410 - 2181454
Alignment:
Q  509 cttttacaattttggccccctaagccaattttgactcagtcaacg 553  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||    
T  2181410 ctttgacaattttggccccctaaaccaattttgactcggtcaacg 2181454  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 35495098 - 35495062
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgt 554  Q
    |||||||||||||  ||||||||||||||||||||||    
T  35495098 ttttggccccctagaccaattttgactcagtcaacgt 35495062  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 11985003 - 11985041
Alignment:
Q  515 caattttggccccctaagccaattttgactcagtcaacg 553  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  11985003 caattttggccccctaacccaattttgacacagtcaacg 11985041  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 11985246 - 11985200
Alignment:
Q  515 caattttggccccctaagccaattttgactcagtcaacgtacacgtg 561  Q
    |||||||||||||| |||||||||||||| ||||||||  |||||||    
T  11985246 caattttggccccccaagccaattttgacccagtcaacagacacgtg 11985200  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 16238206 - 16238260
Alignment:
Q  508 ccttttacaattttggccccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    ||||| ||| ||||||||||| | |||||||||||||| ||||||| ||||||||    
T  16238206 cctttgacagttttggcccccaaggccaattttgactcggtcaacgcacacgtgg 16238260  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 39694203 - 39694157
Alignment:
Q  515 caattttggccccctaagccaattttgactcagtcaacgtacacgtg 561  Q
    |||||||||||||| | |||||||||||| ||||||||| |||||||    
T  39694203 caattttggccccccacgccaattttgacccagtcaacggacacgtg 39694157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 481
Target Start/End: Complemental strand, 84296 - 84268
Alignment:
Q  453 ttgcaattttggctctctaacaaaataaa 481  Q
    |||||||||||||||||||||||||||||    
T  84296 ttgcaattttggctctctaacaaaataaa 84268  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 11932825 - 11932781
Alignment:
Q  509 cttttacaattttggccccctaagccaattttgactcagtcaacg 553  Q
    |||| |||||||||||||| ||| ||||||||||||| |||||||    
T  11932825 ctttgacaattttggccccataaaccaattttgactcggtcaacg 11932781  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 48106252 - 48106329
Alignment:
Q  486 tttgagccctctatatttacccccttttacaattttggccccctaagccaattttgactcagtcaacgtacacgtggc 563  Q
    ||||| ||| |||| |||| |||||||| |||||||||| |||    ||||||||||| ||||||||| |||||||||    
T  48106252 tttgatccccctatgtttagccccttttgcaattttggcaccccggaccaattttgacccagtcaacgcacacgtggc 48106329  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 31530078 - 31530122
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    ||||||||||| | |||||||||||||| ||||||| ||||||||    
T  31530078 ttttggcccccaatgccaattttgactcggtcaacgcacacgtgg 31530122  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 405169 - 405213
Alignment:
Q  518 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 562  Q
    ||||||||||| | |||||||||||||||| ||||| ||||||||    
T  405169 ttttggccccccaggccaattttgactcagccaacgcacacgtgg 405213  T

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