View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3493_high_20 (Length: 269)
Name: NF3493_high_20
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_20 |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4286479 - 4286724
Alignment:
| Q |
1 |
ccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgagga |
100 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286479 |
ccatattcatcattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgagga |
4286578 |
T |
|
| Q |
101 |
atacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286579 |
atacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaa |
4286678 |
T |
|
| Q |
201 |
gggacacttggaatggctgtgaaattcactcctttcgctcctcgtc |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286679 |
gggacacttggaatggctgtgaaattcactcctttcgctcctcgtc |
4286724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 4294952 - 4295195
Alignment:
| Q |
3 |
atatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaat |
102 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4294952 |
atattcatcattgctcatgtgttgctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaat |
4295051 |
T |
|
| Q |
103 |
acttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaagg |
202 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
4295052 |
acttcatcaggcccgctatcacaggtaatggaggaggttccattttggtcaccagaaatgcgccatgccctttgcacgttggtcttggcaacagtgaagg |
4295151 |
T |
|
| Q |
203 |
gacacttggaatggctgtgaaattcactcctttcgctcctcgtc |
246 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4295152 |
gacacttggagtggctgtgaaattcactcctttcgctcctcgtc |
4295195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15366 - 15124
Alignment:
| Q |
1 |
ccatatgcataattgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgagga |
100 |
Q |
| |
|
|||||| |||| | |||||||||||||| || ||| | ||||||| || | ||| ||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
15366 |
ccatattcatactagctcatgtgtggcttttgatggcaaaaacatcaatatcgcaatttgtcatcgacacaagtggtgaacccgttgaggacgatgagga |
15267 |
T |
|
| Q |
101 |
atacttcatcaggcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
15266 |
atacttcatcaggcctgctatcggaggcaatggaggaggttccactttggtcaccggaaatgggccatgccctttgcatgttggtcttgacaacagtgaa |
15167 |
T |
|
| Q |
201 |
gggacacttggaatggctgtgaaattcactcctttcgctcctc |
243 |
Q |
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|||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
15166 |
gggacacttggagtggctgtgaagttcactccttttgctcctc |
15124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 26357 - 26129
Alignment:
| Q |
15 |
gctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggc |
114 |
Q |
| |
|
|||||||||||||| || ||| |||| |||| |||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26357 |
gctcatgtgtggcttttgatggcaacaaaatcaatagcccagtttgtcatcgacacaagtggcgaacccgttgaggacgacgaggaatacttcatcaggc |
26258 |
T |
|
| Q |
115 |
ctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaagggacacttggaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| | |||||||||| |||| |||||||||||||||| | |
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| T |
26257 |
ctgctatcacaggcaatggaggaggtttcactttgatcaccggaaatgggccatgccctttgaatgttggtcttgacaacactgaagggacacttggagt |
26158 |
T |
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| Q |
215 |
ggctgtgaaattcactcctttcgctcctc |
243 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |
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| T |
26157 |
ggctgtgaagttcactccttttgctcctc |
26129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 33774 - 33978
Alignment:
| Q |
39 |
acaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggcctgctatcacaggcaatggaggag |
138 |
Q |
| |
|
||||||||| |||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |
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|
| T |
33774 |
acaacatcaatagctcagtttgtcatcgacacaagtggcgaacctgttgaggacgatgaggaatacttcattagacctgctatcacaggcaacggaggag |
33873 |
T |
|
| Q |
139 |
gttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaagggacacttggaatggctgtgaaattcactcctttcgc |
238 |
Q |
| |
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|||||| ||||||||| ||||||| |||||||||||||| |||||||||| |||| |||||| ||||||||| |||||||||| ||||||||||| || |
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| T |
33874 |
gttccactttggtcacaggaaatggaccatgccctttgcatgttggtcttgacaacactgaaggaacacttggagtggctgtgaagttcactccttttgc |
33973 |
T |
|
| Q |
239 |
tcctc |
243 |
Q |
| |
|
||||| |
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|
| T |
33974 |
tcctc |
33978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 16960 - 17180
Alignment:
| Q |
15 |
gctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcaggc |
114 |
Q |
| |
|
|||||||||||||| || ||| |||| |||| |||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
16960 |
gctcatgtgtggcttttgatggcaacaaaatcattagcccagtttgtcatcgacacaagtggcgaacccgttgaggacgacgaggaatacttcattaggc |
17059 |
T |
|
| Q |
115 |
ctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttgggaacagtgaagggacacttggaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||| | |||||||||| |||| |||||||||||||||| |
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| T |
17060 |
ctgctatcacaggcaatggaggaggtttcactttcatcaccggaaatgggccatgccctttgaatgttggtcttgacaacactgaagggacacttggagc |
17159 |
T |
|
| Q |
215 |
ggctgtgaaattcactccttt |
235 |
Q |
| |
|
| ||||||| |||| |||||| |
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|
| T |
17160 |
gcctgtgaagttcattccttt |
17180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 21370996 - 21370872
Alignment:
| Q |
13 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
112 |
Q |
| |
|
||||| ||||||| || || |||| || |||||| |||| || ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
21370996 |
ttgctaatgtgtgtcttttgatgacaacgacatcaatagctcagtttgtcatcgacacaagtggcgaaccagttgaggacgacgaggaatacttcatcag |
21370897 |
T |
|
| Q |
113 |
gcctgctatcacaggcaatggagga |
137 |
Q |
| |
|
|||||||||||| |||||||||||| |
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|
| T |
21370896 |
gcctgctatcactggcaatggagga |
21370872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 21404230 - 21404083
Alignment:
| Q |
13 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
112 |
Q |
| |
|
||||| |||||||||| || || | ||||||||| |||| || ||||||| |||||||| || ||||| |||||| | |||||||| ||||||||||| |
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|
| T |
21404230 |
ttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagcggtgaacctgttgagaatgatgaggattacttcatcag |
21404131 |
T |
|
| Q |
113 |
gcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa |
160 |
Q |
| |
|
||||||||||| ||||| |||||| || || ||| ||||||||||| |
|
|
| T |
21404130 |
acctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa |
21404083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 21798722 - 21798575
Alignment:
| Q |
13 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
112 |
Q |
| |
|
||||| |||||||||| || || | ||||||||| |||| || ||||||| |||||||| || ||||| |||||| | |||||||| ||||||||||| |
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|
| T |
21798722 |
ttgctaatgtgtggcttttggtggtaacaacatcaatagctcagtttgtcatcgacacaagcggtgaacctgttgagaatgatgaggattacttcatcag |
21798623 |
T |
|
| Q |
113 |
gcctgctatcacaggcaatggaggaggttccattttggtcaccagaaa |
160 |
Q |
| |
|
||||||||||| ||||| |||||| || || ||| ||||||||||| |
|
|
| T |
21798622 |
acctgctatcaccggcaacggaggaagtctcactttagtcaccagaaa |
21798575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 21934889 - 21934713
Alignment:
| Q |
13 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
112 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || |||| || ||||| | |||||| || ||||||||||| | ||| || |||||||||||| | |
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|
| T |
21934889 |
ttgctcatgtgtgtctctttataacgacaacaacaatagctcagtttgtcttggacacagtcggagaacccgttgaaggcgacgaagaatacttcatccg |
21934790 |
T |
|
| Q |
113 |
gcctgctatcacaggcaatggaggaggttccattttggtcaccagaaatgggccatgccctttgcacgttggtcttg |
189 |
Q |
| |
|
|| | ||||||| ||| |||||| |||||| | |||||| |||||||| |||||||||| || |||||||||| |
|
|
| T |
21934789 |
tccagttatcacaaacaaaggaggacgttccactatggtcagcagaaatgaatcatgccctttacatgttggtcttg |
21934713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 44442550 - 44442674
Alignment:
| Q |
13 |
ttgctcatgtgtggctctttatgatcacaacatcagtagcacaaattgtcatagacacaagtggcgaacccgttgaggacgatgaggaatacttcatcag |
112 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |||| || | ||||||||||| | ||| ||||| ||||||| || ||| |||||||||||||| |
|
|
| T |
44442550 |
ttgctcatgtgtgtgtcttcatgatcacaacatcaatagctcagttggtcatagacacgaatggtgaaccagttgaggccggtgacgaatacttcatcag |
44442649 |
T |
|
| Q |
113 |
gcctgctatcacaggcaatggagga |
137 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
44442650 |
gcctataatcacaggcaacggagga |
44442674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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