View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_23 (Length: 249)
Name: NF3493_high_23
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38899208 - 38898967
Alignment:
| Q |
1 |
agtgaaatctagttggtggaagtgttggcatgagaacaagtatgtggtttattttaagtccttggcaaccatgtttctagattactactnnnnnnncttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38899208 |
agtgaaatctagttggtggaagtgttggcatgagaacaagtatgtggtttattttaagtccttggcaaccatgtttctagattactactaaaaaaacttc |
38899109 |
T |
|
| Q |
101 |
caaatgactctgcatatatgcaaccattgtagtaaactgggtttgtaagatagcttttgcatctcaacatggacnnnnnnnacccttcatagctagagcc |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38899108 |
ccaatgactctgcatatatgcaaccattgtagtaaactgggtttgtaagatagcttttgcatctcaacatggactttttttacccttcatagctagagcc |
38899009 |
T |
|
| Q |
201 |
atctctagttcctcacaattacttcagtccatagttcatctc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38899008 |
atctctagttcctcacaattacttcagtccacagttcatctc |
38898967 |
T |
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