View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_29 (Length: 216)
Name: NF3493_high_29
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 5331656 - 5331441
Alignment:
| Q |
1 |
taagaaaaaggtacatgtatttggcccaaatttagaccaatagatatgaattttttcttatatgaaaaatcggagggaatatcaatatgctttatatctg |
100 |
Q |
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| T |
5331656 |
taagaaaaaggtacatgtatttggcccaaatttagacgaatagatatgaattttttcttatatgaaaaatcggagggaatatcaatatgctttatatctg |
5331557 |
T |
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| Q |
101 |
ttatgctgtattaatatttcttatttctttttctttgggaagaaaaatgaggttggctaggtgttgattttgaatgcatgcaggcacagctttattttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5331556 |
ttatgctgtattaatatttcttatttctttttctttgggaagaaaaatgaggttggctaggtgttgattttgaacgcatgcaggcacagctttattttta |
5331457 |
T |
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| Q |
201 |
ttgaaagggtatggcg |
216 |
Q |
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|||||||||||||||| |
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| T |
5331456 |
ttgaaagggtatggcg |
5331441 |
T |
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