View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_4 (Length: 523)
Name: NF3493_high_4
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 36400003 - 36399577
Alignment:
| Q |
18 |
agttttataaactaagttgaaggggatagttcataaactaagtttgagagtttattcaaaataaaaagttgaactttctccacggcatatgaaccttctt |
117 |
Q |
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| T |
36400003 |
agttttataaactaagttgaaggggatagttcataaactaagtttgagagtttattcaaaataaaaagttgaactttctccacggcatatgaaccttctt |
36399904 |
T |
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| Q |
118 |
ttcttcaagaagctaaatgggtttttctaagtagtggtctgattcattcatgaatagtactcttttattttctttattgagtaatcaatgaataatcaat |
217 |
Q |
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| T |
36399903 |
ttcttcaagaagctaaatgggtttttctaagtagtggtctgattcattcatgaatagtactcttttattttctttattgagtaatcaatgaatagtcaat |
36399804 |
T |
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| Q |
218 |
aaattca-tattataaattttacttttctctttcgatggtatttgtgctttctatattga--ttttttgttttgaagaagtgttgttatcttatctatgt |
314 |
Q |
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| T |
36399803 |
aaattcattattataaattttacttttctctttcgatggtatttgtgctttctatattgattttttttttttttaagaagtgttgttatcttatctatgt |
36399704 |
T |
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| Q |
315 |
tgatggtagcaaattcttacaaatttcacatacttctattttttagttggatgcgatgtttatttgtagggtttgaacatttcattacttattcaaattg |
414 |
Q |
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| T |
36399703 |
tgatggtagcaaattcttacaaatttcacatacttctattttttagttggatgctatgtttatttgtagggtttgaacatttcattacttattcaaattg |
36399604 |
T |
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| Q |
415 |
cttcagtgtttctcaatttacccactg |
441 |
Q |
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| T |
36399603 |
cttcagtttttctcaatttacccactg |
36399577 |
T |
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