View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_7 (Length: 396)
Name: NF3493_high_7
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 30782345 - 30782718
Alignment:
| Q |
18 |
atatttcttgaatatatttttgttcgaaatatacattaagagacacacaactatgannnnnnnnnnccttccaaatttgatcattggaagtgattaagaa |
117 |
Q |
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| T |
30782345 |
atatttctcgaatatatttttgttcgaaatatacattaagagacacacaactatgattttttttt-ccttccaaatttgttcattggaagtgattaagaa |
30782443 |
T |
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| Q |
118 |
gtttgtgaagtttcagatcaatttcttgtatttaagaaacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacac-t |
216 |
Q |
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| T |
30782444 |
gtttgtgaagtttcagatcaatttcttgtatttaagaaacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacacct |
30782543 |
T |
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| Q |
217 |
tccattaaataatccaaaagtttatgtatctaaatcttcctttccaattggcaatatggtttgcaacactttcaatggtgtttacttatatgtcagccgt |
316 |
Q |
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| T |
30782544 |
tccattaaataatccaaaagtttatgtatctaaatcttcctttccaattggcgatatggtttgcaacactttcaatggtgtttacttatatgtcagccgt |
30782643 |
T |
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| Q |
317 |
ttacgcgatcactaggaatctggataactgatacaatggatgggtcatgttttctgcgtttgctcctttgcttct |
391 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30782644 |
ttacgcgatcactaggaatctgtataactgatacaatggatgggtcatgttttctgcgtttgctcctttgcttct |
30782718 |
T |
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