View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_high_8 (Length: 380)
Name: NF3493_high_8
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 9561355 - 9560993
Alignment:
| Q |
1 |
aaaatcaaactgaattgaggttcgctttgtaattggacattttttcacatcaaaatataatgattcaaattttacaacacacttctgcatcaaccaaacc |
100 |
Q |
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| T |
9561355 |
aaaatcaaactgaattgaggttcgctttgtaattggacattttttcacatcaaaatataatgattcaagttttacaacacacttctgcatcaaccaaacc |
9561256 |
T |
|
| Q |
101 |
aagctggtgaaatagaataagaaaagcagtaattggtatgaaatttaccaggattatgatgaatagatttgacttctctaaagcgagcaattccctttaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
9561255 |
aagctgatgaaatagaataagaaaagcagtaattggtatgaaatttaccaggattatgatgaatagatttgacttctttaaagcgtgcaattccctttaa |
9561156 |
T |
|
| Q |
201 |
agagtaataaagcaagtaatcccaacaattaattttctcgacaacggttgagattatctgctttaccctctaaaggaaaccgcttgcttgaacgaagcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
9561155 |
agagtaataaagcaagtaatcccaacaattaattttctcgacaacggttgagattatctgctttaccctctaaaggaaactgctcgcttgaacgaagcta |
9561056 |
T |
|
| Q |
301 |
aatctgtgaccacgctatgcttcacaaggatcacactacaaatagatcatcttccacctaatt |
363 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9561055 |
aatctgtgaccatgctatgcttcacaaggatcacactacaaatagatcatcttccacctaatt |
9560993 |
T |
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