View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_1 (Length: 722)
Name: NF3493_low_1
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 291 - 602
Target Start/End: Original strand, 30707119 - 30707428
Alignment:
| Q |
291 |
ttgtaagaagagggcagagttcaagaaaataagaattgagctattaaacgaacattctaaaatatccaaatgtctgaaatatcatnnnnnnngagctctt |
390 |
Q |
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| T |
30707119 |
ttgtaagaagagggcagagtccaagaaaataagaactgagctattaaacgaacattctaaaacatccaaatgcctaaaatatcataaaaaa-gagccctt |
30707217 |
T |
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| Q |
391 |
taagttctagagacgaagttttaataacatgtaaatcataatttcttagactacgatgtggatatgacttaattcctaaattaatttactgttatgcata |
490 |
Q |
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| T |
30707218 |
taaattctctggacggaatttcaataacatgtaaatcataatttcttagactacgatgtggatatgacttaattcctaaattaatttactgttatgcata |
30707317 |
T |
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| Q |
491 |
cgtatgttggaatcacgacttaactacgtctagatgcattaatttactgttatgtatacgtatctagaaggagtttcccaatttactgctactcacacaa |
590 |
Q |
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| T |
30707318 |
cgtatgttggaatcacgacttaactacatttagatg-attaatttactgttatgtatacatatctagaaggagtttcccaatttattgttactcacacaa |
30707416 |
T |
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| Q |
591 |
tcaaatgattaa |
602 |
Q |
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| T |
30707417 |
tcaaatgattaa |
30707428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 30706839 - 30707014
Alignment:
| Q |
1 |
accaaaacgccagtgaaccaccctaaacccaccgctccgaagccccttgtggaatacgacagcgagctggagagaggtggtgcggagaaccaatgttctc |
100 |
Q |
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| T |
30706839 |
accaaaacgccagtgaaccaccctaaacccaccgctccgaagccccttgtggaatacgacggcgagctggagagaggtggtgcggagaaccaatgttctc |
30706938 |
T |
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| Q |
101 |
gtcgcgccaccaccggaaaaggctacatcttgaaagagaagagtttggattttggggttttgagggtagcgaaggg |
176 |
Q |
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| T |
30706939 |
gtcgcaccaccgccggcgaaggctacatcttgaaagagaagagtttggattttggggttttgaaggtagcgaaggg |
30707014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 598 - 697
Target Start/End: Original strand, 30707575 - 30707674
Alignment:
| Q |
598 |
attaacaagatcgtaggcatgcggcagctactattcaattcaatacaaaaaacgttacaatctcttcaaagttattcccgtctaaagaacttcaaagaac |
697 |
Q |
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| T |
30707575 |
attaacaagatcatatgcatgcggcagctactattcaattcaatacaaaaaacgttacaatctcttcaaagttgtgctcgtctaaagaatttcaaagaac |
30707674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5231341 - 5231504
Alignment:
| Q |
1 |
accaaaacgccagtgaaccaccctaaacccaccgctccgaa--gccccttgtggaatacgacagcgagctggagagaggtggtgcggagaaccaatgttc |
98 |
Q |
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| T |
5231341 |
accaaaacgccggtgaaccaccttaaacccacgactccgaattgccccttgtggaactcgacggcgagcaggaaagaggtggtgcgaagaaccaacgttc |
5231440 |
T |
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| Q |
99 |
tcgtcgcgccaccaccggaaaaggctacatcttgaaagagaagagtttggattttggggttttga |
163 |
Q |
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| T |
5231441 |
tcgtcgcgccaccgtcggcggagtctacatc-taaaaaagaagagtttggattttgggattttga |
5231504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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