View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_10 (Length: 373)
Name: NF3493_low_10
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 124 - 366
Target Start/End: Complemental strand, 25928662 - 25928403
Alignment:
| Q |
124 |
aatcacgagtgttgtgaccgaggggccaaaacattgcatttcgacaagtgtccatatggccccatcagcccaaagatccttaaaaatctagagaaagtcc |
223 |
Q |
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| T |
25928662 |
aatcacgagtgttgtgactgagggaccaaaacattgcatttcgacaagtgtccatatggccccatctgcccaaagatccttaaaaatctagagaaagtca |
25928563 |
T |
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| Q |
224 |
ttgt-----------------aaaatcctattgtgaggtatcggttttcatattacactattgattgnnnnnnnnnnnnnagttgataaatgaagtgata |
306 |
Q |
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| T |
25928562 |
tagtaatgttttcaattcagcaaaatcctattgtgaggtatcgattttcatattacactattgattgttttttgttttttagttgataaatgaagtgata |
25928463 |
T |
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| Q |
307 |
tccatcgtattaaattgatacatagaagtgcgaagaactagaattgagttttgatgatgt |
366 |
Q |
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| T |
25928462 |
tccatcgtattaaattgatacatagaagtgcgaagaactagaattgagttttgatgatgt |
25928403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 25930751 - 25930692
Alignment:
| Q |
5 |
agagaggattagaatgatgaggtgaccatcaaaatcatatcatatagtacaaaatatatacaag |
68 |
Q |
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| T |
25930751 |
agagaggattagaatgatgaggtgactatcaaatccatat----aagtacaaaatatatacaag |
25930692 |
T |
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