View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_12 (Length: 360)
Name: NF3493_low_12
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 4021960 - 4022287
Alignment:
| Q |
16 |
aggttgtcgggagattttaaggaaaaatccaagttcatttaacatagtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaa |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021960 |
aggttgtcgggagattttaaggaaaaatccatgttcatttaacatagtatttgagttgggttaaggatttaaattgtcagatttaagtgctatatatgaa |
4022059 |
T |
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| Q |
116 |
tactaacaattggtcaaggaaactctttggcagcaagtgaagcttccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022060 |
tactaacaattggtcaaggaaactctttggcagcaagtgaagcttccccctaccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatg |
4022159 |
T |
|
| Q |
216 |
aagaattcaacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4022160 |
aagaattcaacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaa |
4022259 |
T |
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| Q |
316 |
ctagagataacctacaacttccaattac |
343 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4022260 |
ctagagataacctacaacttccaattac |
4022287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 166 - 343
Target Start/End: Original strand, 4006759 - 4006935
Alignment:
| Q |
166 |
taccgcaaaccaaccacatgttggtgtctccttcaaaaactgtacttatgaagaattcaacaaattttatttttgttatttaaatgaagttacactttaa |
265 |
Q |
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| T |
4006759 |
taccacaaaccaaccacagatttgtgcctccttaaaaaaatctacttatgaagaattcaataaattttatttttgttaattaaatgaacttacactttca |
4006858 |
T |
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| Q |
266 |
tgtgttacaaagaaaaattaattatagaagttctcagttaaacagaaaaactagagataacctacaacttccaattac |
343 |
Q |
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| T |
4006859 |
tgtgttacaaa-taaaaccaatcatagaagttctcagttaaacaagaaaaccagagataacctataactttcaattac |
4006935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 3807361 - 3807446
Alignment:
| Q |
220 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
297 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
3807361 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3807446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 3814805 - 3814890
Alignment:
| Q |
220 |
attcaacaaattttatttttgttatttaaatgaagttaca--------ctttaatgtgttacaaagaaaaattaattatagaagtt |
297 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||||| |
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| T |
3814805 |
attcaacaaatcttagttttgttatttaaatgaaattacacttttaatcttttatgtgttacaaagaaaaatcaattttagaagtt |
3814890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 3958635 - 3958518
Alignment:
| Q |
222 |
tcaacaaattttatttttgttatttaaatgaagttacactttaatgtgttacaaagaaaaatt----aattatagaagttctcagttaaacagaaaaact |
317 |
Q |
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||||||||| | |||||||||| ||| || ||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| | ||| | |
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| T |
3958635 |
tcaacaaatctaatttttgttacttagcataacttagactttcatgtgttacaaagaaaaattaatcaattatagcagttctcatttaaagaagaaagtt |
3958536 |
T |
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| Q |
318 |
agagataacctacaactt |
335 |
Q |
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| T |
3958535 |
aaagataacctacaactt |
3958518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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