View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3493_low_13 (Length: 352)
Name: NF3493_low_13
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 29676775 - 29676458
Alignment:
| Q |
14 |
agacacgtcgacactactaatgccaaaaacataagccacatacagacaccgatacataaaaaataaaccaaacattttatgattaaactactaacgagct |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29676775 |
agacacgttgacactactaatgccaaaaacataaggcacatacagacaccgatacataaaaaataaaccaaatattttatgattaaactactaacgagct |
29676676 |
T |
|
| Q |
114 |
catgcgtttgcatagtcctgagaaaaatgtagcggaaaacagatttgtgaaattctgccacatgtcagtagaaattaggaaaatactatttataagatag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29676675 |
catgcgtttgcatagtcctgagaaaaatgt-gctgaaaacagatgtatgaaattctgctacatgtcagtagaaattaggaaaatactatttataagatag |
29676577 |
T |
|
| Q |
214 |
atagagatcaaagaggatacgcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgcttgag |
313 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29676576 |
atagggatcaaagaggatactcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgcttgag |
29676477 |
T |
|
| Q |
314 |
acgcccacaactctccagt |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29676476 |
acgcccacaactctccagt |
29676458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University