View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_14 (Length: 331)
Name: NF3493_low_14
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 27 - 321
Target Start/End: Complemental strand, 10857441 - 10857141
Alignment:
| Q |
27 |
tgtacataccttttcctcaaacctcttgcgtattgtagaattcagatcaccttcccatcgtagtgttgcatcttcga---atgtaact---gaagacaat |
120 |
Q |
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| T |
10857441 |
tgtagatacctcttcctcaaacctcttgcgtattgtagcattcagatcaccttcccattgtggggttttatctttgatgaatgtaactccagaagacaat |
10857342 |
T |
|
| Q |
121 |
ttggttggatctatcttgttgactggacagaaagttttcatcaagatgcattgaatcaaggatactttctccaaggatggaaagcacaaggaaaacttcc |
220 |
Q |
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| T |
10857341 |
ttggtcggatctatcatgttgactggactgaaagttttcatccagatgcattgaatcaaggacactttctccaaggatggaaagcacaaggaaaacttcc |
10857242 |
T |
|
| Q |
221 |
cagggtaaaagcaccttagctttgataaatcttttagaaacaaagtgtggaggtcctcaaatattaactttttatcttcacctgattcatccccctctgt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10857241 |
cagggtaaaagcaccttagctttgataaatcttttagaaacaaagtctggaggtcctcaaatattaactttttatcttcacctgattcatccccctctgt |
10857142 |
T |
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| Q |
321 |
g |
321 |
Q |
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| |
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| T |
10857141 |
g |
10857141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 27 - 321
Target Start/End: Complemental strand, 10888944 - 10888644
Alignment:
| Q |
27 |
tgtacataccttttcctcaaacctcttgcgtattgtagaattcagatcaccttcccatcgtagtgttgcatct-tcgaatgtaactg------aagacaa |
119 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||| || || | | | | | |||| ||||| || |||| |
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| T |
10888944 |
tgtacatacctcttcctcaacccacttgcgtattgtagaattcagatcaacttcccattgtggt-tcacctgtgtggaatctaactcctccataatacaa |
10888846 |
T |
|
| Q |
120 |
tttggttggatctatcttgttgactggacagaaagttttcatcaagatgcattgaatcaaggatactttctccaaggatggaaagcacaaggaaaacttc |
219 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10888845 |
tttggttggatctatctcgttgactggactgaaagtattcatcgagatgcatagaatcaaggacactttctccaaggatggaaagcacaaggaaaacttc |
10888746 |
T |
|
| Q |
220 |
ccagggtaaaagcaccttagctttgataaatcttttagaaacaaagtgtggaggtcctcaaatattaactttttatcttcacctgattcatccccctctg |
319 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888745 |
ccagaataaaagcaccttagctttgataaatcttttagaaacaaagtgcggaggtcctcaaatattaactttttatcttcacctgattcatccccctctg |
10888646 |
T |
|
| Q |
320 |
tg |
321 |
Q |
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|| |
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| T |
10888645 |
tg |
10888644 |
T |
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