View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_15 (Length: 325)
Name: NF3493_low_15
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 53005354 - 53005654
Alignment:
| Q |
18 |
aatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaaattaacaatccatgattcgattaccttattattcaattacgatatt |
117 |
Q |
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| T |
53005354 |
aatatgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaaattaacaatccatgattcgattaccttattattcaattacgatatt |
53005453 |
T |
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| Q |
118 |
ggttgttatttgtgcagtatgtctgccattgcggcg--------tctgatgttttttatttattcataatgcctattatatgtttggtacttgacattgt |
209 |
Q |
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| T |
53005454 |
ggttgttatttgtgcagtatgtctgccattgcggcgattttcaatctgatgttttttatttattcataatgcctattatatgtttggtacttgacattgt |
53005553 |
T |
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| Q |
210 |
acatgattacacagccttattttttatctcattctttattacatacatctacactggtatcactacttcgtatcgttaagtatagctaatttcctaaatc |
309 |
Q |
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| T |
53005554 |
acatgattacacaacctta-tttttatctcattgtttat----tacatctacactggtatcactacttcgtatcgttaagtatagctaatttactaaatc |
53005648 |
T |
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| Q |
310 |
tctgtg |
315 |
Q |
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|||||| |
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| T |
53005649 |
tctgtg |
53005654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 26451783 - 26451833
Alignment:
| Q |
21 |
atgttgtcgttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
71 |
Q |
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| T |
26451783 |
atgttgtagttaagcaacattaatccaatgtctccggcgcaccagcgacaa |
26451833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 13861554 - 13861512
Alignment:
| Q |
29 |
gttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
71 |
Q |
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| T |
13861554 |
gttaagcaacattaatccaatgtctccggcgcaccagcgacaa |
13861512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 52526850 - 52526808
Alignment:
| Q |
29 |
gttaagcaacattaatccaatgtatccggcgcaccagcaacaa |
71 |
Q |
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| T |
52526850 |
gttaagcaacattaatccaatgtctctggcgcaccagcgacaa |
52526808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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