View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_17 (Length: 298)
Name: NF3493_low_17
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 26995871 - 26995618
Alignment:
| Q |
17 |
tgaagtagtgaaattgagagaaaaagggtgaagattacacttgacttaaaagatgccatttgagatatgtattgagatagaacaaagtatgaagtagaag |
116 |
Q |
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| T |
26995871 |
tgaagtagtgaaattgtgagaaaaagggtgaagataacacttaacttaaaagatgccattt-----------tgagatagaacaaagtatgaagtagaag |
26995783 |
T |
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| Q |
117 |
ggaatgtggaaatgttgtgaggtgatggaaatgtaagatgtagttgtaggtatatatatagttgaagtcaaattatgtaggaggatgagtggagtgagtg |
216 |
Q |
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| T |
26995782 |
ggaatgtggaaatgttgtgaggtgatggaaatgtaagatgtagttgtaggtatatatatagttgaagttaaattatgtaggaggatgagtggagtgagtg |
26995683 |
T |
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| Q |
217 |
gtggatgtgccagctatattacgcgttgttattttgttattccagtttgcatgagttcatagatt |
281 |
Q |
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| T |
26995682 |
gtggatgtgccagctatatcacgcgttgttattttgttattccagtttgcatgaattcattgatt |
26995618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 27002144 - 27001983
Alignment:
| Q |
16 |
atgaagtagtgaaattgagagaaaaagggtgaagattacacttgacttaaaagatgccatttgagatatgtattgagatagaacaaagtatgaagtagaa |
115 |
Q |
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||||||||||||||||| ||||||||| || |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27002144 |
atgaagtagtgaaattgtgagaaaaagagtaaagattgcacttaacttaaaagatgccatttgggatatgtattgagatagaacaaagtatgaagtagaa |
27002045 |
T |
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| Q |
116 |
gggaatgtggaaatgttgtgaggtgatggaaatgtaagatgtagttgtaggtatatatatagt |
178 |
Q |
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| T |
27002044 |
-ggaatgtggaaatgttatgtgctgatggaaatgtaagatggggttgtaggtatatatatagt |
27001983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 171 - 281
Target Start/End: Complemental strand, 27001936 - 27001835
Alignment:
| Q |
171 |
tatatagttgaagtcaaattatgtaggaggatgagtggagtgagtggtggatgtgccagctatattacgcgttgttattttgttattccagtttgcatga |
270 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
27001936 |
tatatagttgaagtcaaattatgttggagggtgagtggag---------gatgtgccagctatattacgcgttgatattttattattccagtttgcatga |
27001846 |
T |
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| Q |
271 |
gttcatagatt |
281 |
Q |
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|||||||||| |
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| T |
27001845 |
attcatagatt |
27001835 |
T |
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