View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3493_low_22 (Length: 256)
Name: NF3493_low_22
Description: NF3493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3493_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 7961340 - 7961111
Alignment:
| Q |
17 |
actaaacatgcacaattaatattctttggtcatggaagcacctcgtaaatgactacgaagcaaggaagaatagctctaggattgaaaacagttaaatctt |
116 |
Q |
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| T |
7961340 |
actaaacatgcac----aatattcgttcgtcatggaagcacctcgtaaatgactacgaagcaaggaagaatagctctaggattgaaaacagttaaatctt |
7961245 |
T |
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| Q |
117 |
cgagatttgagtaactcccagcattccccgcagtagaatcaaaacacaccatttccatttcttcctccgacactacccgtgcaccttcctccgccacgcg |
216 |
Q |
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| T |
7961244 |
ctagatttgagtaactcccagcattccccgcagtagaatcaaaacacaccatttcc------tcctccgacactacccgtgcaccttcctccgccacgcg |
7961151 |
T |
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| Q |
217 |
cttcactttcccggcaatcacacgacacacgagcattgcc |
256 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
7961150 |
cttcactttcccggcaatcacacgacacaccagcattgcc |
7961111 |
T |
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